Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0258 ATGAATGTTAGAAGCTTCCCAGAAGGAGCCAGGAACTGTTATACCTTACGACCAGAACAAGAAAAGGATAATAAGTATTTGATCAGAGCTTTATTCATGTATGGGAATTATGACTCCAAGAATCAATTTCCAGAATTCAAACTATATCTGGGTACTGATGAATGGGACACTGTCAACATTGGGGATTCATCTACAGCTTTATGGAAGGAAATTATACACGCCCCGAAAACAAATGACATAGATGTGTGTCTAGTAAACATCGATTCTGGGACACCTTTCATTTCAGTGTTAGAGCTCCGACCGCTTAATAATTCCATTTATGATAAGACTGAACCCGGGTCGCTGCTATTCTATAACAGGTGGGATTTTGGTGCAGAACAAGATATGGAAATCAGGGACAAAGATGATGTTTTCGACCGCATTTGGAACCCATTCAGATTGGATTCCTGGGAATTCATTACTGCATCGTATGGGAGTTATACCCTTAGTACCAGTGAATATAGGCTTCCACGGACAGTCATGGCGACTGCTGCAACGCCTGCAAATGAAAGTGAATCCTTGCGCCTCTCTTTGAACATCAGTGGTGATCCTTCTCAGAAGTTATACATGTACATGCACTTTGCCGAGGTTGAGAAACTCAATGAAGGCGAGTTGAGAGAATTTACTATCTCACTGAATGATGATGAGTCATGGGGTGGTGGGGCTCTCACTCCTCCATACCTGTCTTCCGACACGTTGTATAGTACAAATTCTGTTAGTGGAAGCACCACAAACAAACTGTTATTTACAATTAAAAAGACAGGTAGATCCACACGTCCGCCCATTATCAATGCTATGGAGGTTTACAAGATAAAAGATTTCTCACAATCATCAACTCTCCAAGGCGATGTTGATGCTATCAAGAAGATCAAATCAGTGTACACAATGAGCAGAAACTGGCAAGGAGATCCATGTCTCCCGGAGTCGTACCGGTGGACTGGCCTGAGCTGCAGCAAGAGTGGTTCTCCTAGTATCATCTCCTTAGATTTATCTTACAATAACTTAACTGGAGAAATACCAGATTTTCTAGCTGAGCTGACTTCCTTGAACTCCCTGAACTTATCAGGGAACAATTTCACAGGGTCAGTTCCATTGGCTCTTCTTAGAAAATCAGATGAGGAATCCCTGTCTTTGAGTTTGGATGGGAATCCGTATCTTTGTAAGACAAACTCATGTGCTGAGGAGGAAGAGAAGCAGAAGAAGAAGGGTAGGAATATTACTGTTCCAGTAGTTGCATCCGTTGCATCCATTGCTTCAGTTCTACTCCTCTTAGCTGCATTAGCCACCTTGTGGAGATTTAAAATAAGAAGACAGCATGGAACAGATGGCAAACCTAAGGAAGAAAAAAAGTTATTGGATTCGAAGAATCAATGCTTCAGTTACTCTGAGGTGGTGAGCATCACTGACAACTTCCAAAAGGTGCTCGGAAAAGGAGGATTTGGAGCAGTTTACAGTGGCCATTTGAAAGATGGCACTCAAGTTGCTGTCAAGATGCTCTCGCCATCATCAGCTCAAGGTTACATATCGCTAAATCTGGATATATTTGGGTGTTCATCTGAACAACAGGCTCAGCTGTTGGCAAGAGTTCATCATAGAAACTTGGCTTCTCTGGTTGGATACTGTGATGAAGGTTCAAACATGGGGCTCATTTATGAGTACATGGCTAATGGGAACTTAGAAGAGCTTTTATCAGGTAAAAATGCACCTGTCTTGAGTTGGGAACAAAGACTTCGAATTGCAATTGATGCAGCACAAGCACTGGAATATTTGCATAATGGTTGCAAACCACCCATAATCCACAGAGATGTTAAGACTGCAAACATCTTACTGAATGAGAAACTGCAAGCCAAAGTTGGGGATTTTGGGATGTCCAGAATTATTCCCTTTGAATCTGAAACTCATGTATCAACTGCAGTTGTTGGCACACCCGGGTACCTTGATCCTGAGTATTACATAACAGCGAGGTTGAACGAGAAAAGTGATGTTTATAGCTTTGGGATTGTTCTGTTGGAGCTTATTTCAGGAAAACCTGCAATAATAGGTAGCCATGGGAACAAGGATCACATAGTCCAATGGGTTAGTCCAATTATTTCCAGAGGAGAAATAAGAAGCATTGTGGATCCGAGGTTAGAAGGAGACTTGATCAACACCAATTCTGCGTGGAAAGCTGTGGAGACTGCAATGGCTTGTGTTCCATCCATCTCCATCCAGAGGCCAACCATGAGTGAGGTAGTAGGGGAACTAAAGGAGTGTTTGAATATAGAGATAAGAGATGAAAGAGCTTATAATGTGAAAGAGGACAATGGCATAATATCAAGCTATTCACCTGAAATGGTTGTTTTAGGTATTGATGAAGATGCAATGGGTCCCCAAGCAAGGTAG 2421 0.4205 MNVRSFPEGARNCYTLRPEQEKDNKYLIRALFMYGNYDSKNQFPEFKLYLGTDEWDTVNIGDSSTALWKEIIHAPKTNDIDVCLVNIDSGTPFISVLELRPLNNSIYDKTEPGSLLFYNRWDFGAEQDMEIRDKDDVFDRIWNPFRLDSWEFITASYGSYTLSTSEYRLPRTVMATAATPANESESLRLSLNISGDPSQKLYMYMHFAEVEKLNEGELREFTISLNDDESWGGGALTPPYLSSDTLYSTNSVSGSTTNKLLFTIKKTGRSTRPPIINAMEVYKIKDFSQSSTLQGDVDAIKKIKSVYTMSRNWQGDPCLPESYRWTGLSCSKSGSPSIISLDLSYNNLTGEIPDFLAELTSLNSLNLSGNNFTGSVPLALLRKSDEESLSLSLDGNPYLCKTNSCAEEEEKQKKKGRNITVPVVASVASIASVLLLLAALATLWRFKIRRQHGTDGKPKEEKKLLDSKNQCFSYSEVVSITDNFQKVLGKGGFGAVYSGHLKDGTQVAVKMLSPSSAQGYISLNLDIFGCSSEQQAQLLARVHHRNLASLVGYCDEGSNMGLIYEYMANGNLEELLSGKNAPVLSWEQRLRIAIDAAQALEYLHNGCKPPIIHRDVKTANILLNEKLQAKVGDFGMSRIIPFESETHVSTAVVGTPGYLDPEYYITARLNEKSDVYSFGIVLLELISGKPAIIGSHGNKDHIVQWVSPIISRGEIRSIVDPRLEGDLINTNSAWKAVETAMACVPSISIQRPTMSEVVGELKECLNIEIRDERAYNVKEDNGIISSYSPEMVVLGIDEDAMGPQAR* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0258 806 Pfam Protein tyrosine and serine/threonine kinase 484 691 IPR001245 GO:0004672|GO:0006468
Vvi9g0258 806 ProSiteProfiles Protein kinase domain profile. 482 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0258 806 Gene3D Transferase(Phosphotransferase) domain 1 567 784 - -
Vvi9g0258 806 SMART serkin_6 482 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0258 806 SUPERFAMILY L domain-like 300 380 - -
Vvi9g0258 806 Pfam Malectin-like domain 2 284 IPR024788 -
Vvi9g0258 806 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Vvi9g0258 806 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 567 774 - -
Vvi9g0258 806 SUPERFAMILY Protein kinase-like (PK-like) 466 761 IPR011009 -
Vvi9g0258 806 Gene3D Phosphorylase Kinase; domain 1 455 566 - -
Vvi9g0258 806 CDD STKc_IRAK 488 763 - -
Vvi9g0258 806 Gene3D Ribonuclease Inhibitor 297 402 IPR032675 -
Vvi9g0258 806 PANTHER OS07G0107800 PROTEIN-RELATED 2 765 - -
Vvi9g0258 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0258 Vvi-Chr9 2510633 2515605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0258 2 806 Receptor kinase-like Gene Family AT2G19210 47.059 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0258 Malectin_like 3.5e-93 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0258 - - vvi:100242932 1498.8