Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0252 ATGTGGGACAGTCTTAACTGCAGCTATGATGGTCATGAACCCCCCAGGATCATATCCTTGAACTTGTCCTCAAGTGGATTGACTGGGGAAATAGCTCCTTCTATATCAAATCTAACGTTGGTACAATATCTGGATTTATCAAACAATGGCTTAACTGGACCAGTACCTGATTTTCTTTCTCAACTTCCATTGTTGAGGGCCCAAAACTTGACAGGAAACAAGCTGACAGGATCTATTCCAGTTGAACTCATTGAAAGATCAGAGAATGGATCACTGCTATTGAGTGTGAATGAAAATCCAAATCTTTGTTGGTCGGGTTCATGCAAAAAGAAAAAGAAGTTTGTTGTTCCAATAGTGGCATCAGTTGCTGCACTATTCATTCTCTTAACTGCACTGGCTATCTTCTGGAAGCATAGAAGGGGGGGAAAACAAGTTAGTAAGGATCAGGAAATGGTTTCCGAATCCAACAGAGATGAAGGGTCTTTGGTGTCAAAAAAACAGCAATTTACATATTCTGAGGTCATCACTATCACCAACAACTTTGAGAAGGAAGTGGGGAAAGGTGGATTTGGAACAGTTTACCATGGCCATCTAGATGACACTCAAGTTGCTGTGAAGATGTTCTCTCCATCATCAATTCAAGGATATAAGCAGTTTCAGGCAGAGGCAAAACTTCTTATGAGAGTTCACCACAGAAACATTACTTCTCTTATTGGCTATTGCAAGGAAGGCAACAACATGGGGCTCATCTATGAGTACATGGCCAATGGAGACTTACAGAGGCATCCATCTGGTAATGAGAGAAATACAAATGTTCTGAGTTGGGAAGAGAGACTAAGAATAGCAGTGGAGACAGCACAAGGATTGGAGTATTTGCACAATGGTTGTAAGCCACCTATAATCCACAGAGACATAAAGTCTACCAACATCTTATTGAATGAAAAATTCCAGGCCAAACTAGCTGATTTTAGGCTGTCCAGAGCTTTTCCAAATGAAGGCAGCACTCATGTGTCAACAATAGTTGCTGGCACCCGTGGCTACCTTGATCCTGAGTACCATGCATCAAACAGGTTGACTGAGAAAAGCGATGTTTTTAGCTTTGGGGTTGTTCTTTTAGAGATCATCACAAGCCAGTCCCCAGTTCCTGGAAATCATGAGGAGACTCACATAATTCAATGGGTTAGTTCCATGCTAGCAAATGGGGATATTAAGAATATTGTTGACCCCAGGCTACAGGGAGACTTTGACATCAATTCTGCCTGGAAAGCTGTAGAAGTAGCAATGTCTTGTGTAGCTTCCACTTCAACTGAAAGGCCAGCTATGAACTATGTAGTTATGGAACTAAATCAGTGTTTGGAAATGGAGGCATCCAGGAATCAAGGGACTGAATCAAAAGATTCAACTGATATGGTTTCTATGAAGCTGCACACTGGAACAACTCCCCTGGCACAGTAA 1455 0.4179 MWDSLNCSYDGHEPPRIISLNLSSSGLTGEIAPSISNLTLVQYLDLSNNGLTGPVPDFLSQLPLLRAQNLTGNKLTGSIPVELIERSENGSLLLSVNENPNLCWSGSCKKKKKFVVPIVASVAALFILLTALAIFWKHRRGGKQVSKDQEMVSESNRDEGSLVSKKQQFTYSEVITITNNFEKEVGKGGFGTVYHGHLDDTQVAVKMFSPSSIQGYKQFQAEAKLLMRVHHRNITSLIGYCKEGNNMGLIYEYMANGDLQRHPSGNERNTNVLSWEERLRIAVETAQGLEYLHNGCKPPIIHRDIKSTNILLNEKFQAKLADFRLSRAFPNEGSTHVSTIVAGTRGYLDPEYHASNRLTEKSDVFSFGVVLLEIITSQSPVPGNHEETHIIQWVSSMLANGDIKNIVDPRLQGDFDINSAWKAVEVAMSCVASTSTERPAMNYVVMELNQCLEMEASRNQGTESKDSTDMVSMKLHTGTTPLAQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0252 484 ProSitePatterns Protein kinases ATP-binding region signature. 185 206 IPR017441 GO:0005524
Vvi9g0252 484 SUPERFAMILY L domain-like 14 84 - -
Vvi9g0252 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Vvi9g0252 484 PANTHER OS07G0107800 PROTEIN-RELATED 1 455 - -
Vvi9g0252 484 Pfam Protein tyrosine and serine/threonine kinase 181 448 IPR001245 GO:0004672|GO:0006468
Vvi9g0252 484 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Vvi9g0252 484 SMART serkin_6 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0252 484 CDD STKc_IRAK 185 450 - -
Vvi9g0252 484 ProSiteProfiles Protein kinase domain profile. 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0252 484 FunFam Leucine-rich repeat receptor-like protein kinase 155 253 - -
Vvi9g0252 484 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 254 461 - -
Vvi9g0252 484 SUPERFAMILY Protein kinase-like (PK-like) 161 448 IPR011009 -
Vvi9g0252 484 Gene3D Phosphorylase Kinase; domain 1 166 253 - -
Vvi9g0252 484 Gene3D Transferase(Phosphotransferase) domain 1 254 476 - -
Vvi9g0252 484 FunFam Leucine-rich repeat receptor-like kinase 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0252 Vvi-Chr9 2470639 2473398 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0252 2 475 Receptor kinase-like Gene Family AT1G51800 53.074 1.26e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0252 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0252 - - vvi:100246311 626.706