Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi9g0250 | ATGGGGCTCATATATGAGTACATGGTTAATGGAGACTTAAAAAGGCATCTATCGGATAATTACTTTATGATGCCAAGTGTCTTGAGTTGGGAAGAGAGACTACGAATAGCAACAGATGCAGCACAAGGACTGGACTATCTGCATGATGGTTGTAAGCCATCCATCATCCATAGAGATATAAAGTCTACCAACATCTTATTGAATGAAAGATTCCAGGCCAAACTAGCTGATTTTGGGCTGTCCAGAGCTTTTCCAATTGAAGGTAGCAGTCACGTGTCAACAGCCGTTGTTGGCACCCCTGGCTACCTTGATCCTGAGTTGACGGAGAAGAGTGATGTTTTTAGCTTTGGAGTTGTTCTCTTGGAGATTATCACAAGCCAACCTGCAATTTCAAAGGACCGTGAGAAGACTCACATAATTGAATGGGTTAGTTGCATGCTTGCAAATGGGGATATTAAGAATACTGTTGATCCAAGGTTACAGGGAGAATTTGACATCAATTCTGCCTGGAAAGCTGTGGAAGTGGCCATGTGTTGCGTGTCTCCCACTTCAACAGAAAGGCCAGCCATGCACTATGTAGTGATGGAACTAAAGCAGTGTTTGGAAATGGAGGCATCTCAGAAGGAGGGTCATGAGCCTGAATCAAAAGATTCAATTGGAATAACCACTGAGGATCAGAGCACTGAAATTATCCCCCTAGCACGGTAG | 708 | 0.4364 | MGLIYEYMVNGDLKRHLSDNYFMMPSVLSWEERLRIATDAAQGLDYLHDGCKPSIIHRDIKSTNILLNERFQAKLADFGLSRAFPIEGSSHVSTAVVGTPGYLDPELTEKSDVFSFGVVLLEIITSQPAISKDREKTHIIEWVSCMLANGDIKNTVDPRLQGEFDINSAWKAVEVAMCCVSPTSTERPAMHYVVMELKQCLEMEASQKEGHEPESKDSIGITTEDQSTEIIPLAR* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi9g0250 | 235 | PANTHER | OS07G0107800 PROTEIN-RELATED | 1 | 205 | - | - | |
| Vvi9g0250 | 235 | ProSiteProfiles | Protein kinase domain profile. | 1 | 201 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi9g0250 | 235 | MobiDBLite | consensus disorder prediction | 205 | 235 | - | - | |
| Vvi9g0250 | 235 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 55 | 67 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi9g0250 | 235 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 197 | IPR011009 | - | |
| Vvi9g0250 | 235 | FunFam | LRR receptor-like serine/threonine-protein kinase IOS1 | 8 | 210 | - | - | |
| Vvi9g0250 | 235 | SMART | serkin_6 | 1 | 201 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi9g0250 | 235 | Pfam | Protein kinase domain | 3 | 193 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi9g0250 | 235 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 226 | - | - | |
| Vvi9g0250 | 235 | MobiDBLite | consensus disorder prediction | 205 | 219 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi9g0250 | Vvi-Chr9 | 2460725 | 2461970 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi9g0250 | 1 | 235 | Receptor kinase-like Gene Family | AT1G51800 | 60.494 | 4.94e-98 | 303 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-I-1 | Vvi9g0250 | Pkinase | 9.1e-28 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi9g0250 | - | - | vvi:109121517 | 455.677 |