Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0249 ATGGATAGTTTGGGTTGGGATGGCTCACCAGTGGTTGCGAACGCATCGTCCTTGTGGAGCAATCAGCAAAGTGGGGTCGAGCAAAGCTTGATGGTGACCAACTTGAACTGCTGCGGTTATGGGGGAAGGATGCATCTGGCGGAAGACATGTTTGATCCAATTCAAGAGCTCCAAAAAGCTCAACCTTCACATGGGACTTCAAGTTCTAATAAAGTAAGTGAAATGGCTCAGCAATTGGCCCCGGCTTTTGCTTCGGATTCCATACATGTTGTTTCAAACTTGAATTTAGCAGCAGATACCGGGCTTGCTAAGTCGGTGGCTGGAACCAATTGGGAAGAAGCCTTGAGAGCTGAATTGGGGTCTTCCCCTTTGATCAACAGGCCTTATATCATGAACCCATTAGGCAGTTTAATGGCTGGTTTTGGAAAAACCCAGCAATTTCAGGTTGTTAATGGCTTCCAAGATGGCACAGCTGGTGTTTCTGCGACGGGCTCTCTTGAGTCTCTTGACTGCTTGCTGTCAGCAACTAACAGTAACACTGAAACATCTATTGAAGATGATGGAATTTCTGTGATCTTCTCTGATTGCAGAAACTTATGGAACTTTGGTTCTGGCAGTGCAGTTTCATCTGGAGATTCTGAGAACAATGGCTTCAATACAAGAAAGAAGGAGATGCGTTGCGCGGTAAATGAGCTTGATGAAACAGTCTCTCAGGGTGCCTCAGACCGACTTGCTAACCCTGGAATATGTTCAGAAACCAAGCCTAATTCTACGAAGAGAAGCTGTGATCAAAATGAACTCAAAGTTAGTCCAAATTATCATTGCTTTGATCTTCTCCAGTCTGATGCTTGCACCCCAGATGGCGGTTTCCGACTCATTTCTGAGAATTCACCGAAACCAAAGAAGCCGAGAGCGGAAAAGCGGCCGCCAAGTTCATCAAACATCAACTTCCAGCAGCCGAGTTCATCGGCGTCCTCAGTGGAGGAACCTGATTCTGAGGCCATTGCACAAATGAAGGAGATTATTTACCGGGCTGCAGCTTTCAGGCCGGTGAATTTTGGAATGGATGCGGTGGAGAAGCCCAAGAGGAAGAATGTTAGGATATCAACTGATCCACAAACAGTGGCTGCAAGGCAAAGGAGGGAGAGAATCAGTGAAAGAATTAGGGTTTTGCAGAGGCTGGTTCCTGGTGGAAACAAGATGGATACTGCATCAATGCTTGATGAGGCTGCTAATTATCTCAAGTTCCTCAGGTCACAAGTCAAAGCTCTAGAAACCCTAGGCCACAAGCTTGATTCAGTGAATTGTGTCCATACAAACCTTCCCTTCTCTGCATTGCCCTTCAACCACTCATTTCCCATGCAAACCCATCTTCCACTCCAAAACCCTAGCCCAATCCACCAACCCAGGAGTTGA 1416 0.4654 MDSLGWDGSPVVANASSLWSNQQSGVEQSLMVTNLNCCGYGGRMHLAEDMFDPIQELQKAQPSHGTSSSNKVSEMAQQLAPAFASDSIHVVSNLNLAADTGLAKSVAGTNWEEALRAELGSSPLINRPYIMNPLGSLMAGFGKTQQFQVVNGFQDGTAGVSATGSLESLDCLLSATNSNTETSIEDDGISVIFSDCRNLWNFGSGSAVSSGDSENNGFNTRKKEMRCAVNELDETVSQGASDRLANPGICSETKPNSTKRSCDQNELKVSPNYHCFDLLQSDACTPDGGFRLISENSPKPKKPRAEKRPPSSSNINFQQPSSSASSVEEPDSEAIAQMKEIIYRAAAFRPVNFGMDAVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLRSQVKALETLGHKLDSVNCVHTNLPFSALPFNHSFPMQTHLPLQNPSPIHQPRS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0249 471 Gene3D - 373 436 IPR036638 GO:0046983
Vvi9g0249 471 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 176 464 IPR045843 GO:0003700|GO:0006355
Vvi9g0249 471 FunFam BHLH transcription factor 371 435 - -
Vvi9g0249 471 SMART finulus 374 423 IPR011598 GO:0046983
Vvi9g0249 471 Coils Coil 407 427 - -
Vvi9g0249 471 MobiDBLite consensus disorder prediction 309 330 - -
Vvi9g0249 471 MobiDBLite consensus disorder prediction 238 263 - -
Vvi9g0249 471 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 373 432 IPR036638 GO:0046983
Vvi9g0249 471 MobiDBLite consensus disorder prediction 289 331 - -
Vvi9g0249 471 Pfam Helix-loop-helix DNA-binding domain 378 417 IPR011598 GO:0046983
Vvi9g0249 471 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 417 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0249 Vvi-Chr9 2455629 2457044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0249 124 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 52.707 1.05e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi9g0249 HLH 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0249 - - vvi:100251455 916.376