Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0236 ATGGCGACAGTTCCAGGGCAGTTGATTTGGGAGATCGTGAAGAAGAATTCCTCCTTTCTCGTGAAGGAGTTCGGGAACGGCACCGCCAGTGTGCAGTTCAGCAAAGAGAGCAACAATCTCTACAACGTCAACTCCTACAAGCACTCTGGGTTGGCAAACCACAAAACAGTTACTATTCAAGGAGGCAAAGATAATGCAGTGGTGCTTGCAACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTTGCTTCACAAGTCTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGGTTGAGTGCTGTGCACAGAAGCCTTAAGGTGGCTAAATCTGGTGTCAAGAAGAGGAACAGGCAGGCTGTTAAGAGCTGCGGTAGGAAGTGA 450 0.4756 MATVPGQLIWEIVKKNSSFLVKEFGNGTASVQFSKESNNLYNVNSYKHSGLANHKTVTIQGGKDNAVVLATTKTKKQNKPGSLLHKSAMKKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKSCGRK* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0236 149 FunFam 60S ribosomal protein L28 5 132 - -
Vvi9g0236 149 Pfam Ribosomal L28e protein family 8 127 IPR029004 -
Vvi9g0236 149 PANTHER 60S RIBOSOMAL PROTEIN L28 1 148 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vvi9g0236 149 Gene3D - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0236 Vvi-Chr9 2357503 2360295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0236 1 142 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 75.524 1.19e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0236 K02903 - vvi:100261817 295.049