Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0232 ATGGGAAGAAGGATTTTGAATGATGCTTTGAGGACAATGGTGAATGCAGAGAGGAGAGGGATGGCTAAAGCTCACTTGCAGCCCATTTCCACTGTCATGACATCCTTTCTCAAGATCATGAAAGATCATGGATACATTAAAGATTTTCAAGTATATGATCCACACAGAGTGGGAAAGATAACAGTTGAACTGCAAGGCAGGATTAATGATTGTCGAGCTCTTACGTATAGGCAGGATCTCAAAGCCAAGGACATAGAGAAATATACAGCTAATAAGCTTCCAACGCGTCAGTGGGGCTATGTTGTGATTACAACTCCTAATGGCGTTTTGGATCATGAAGAGGCCGCCCAACAAAACGTCGGTGGTCAGGTTCTTGGCTACTTCTATTAA 390 0.4282 MGRRILNDALRTMVNAERRGMAKAHLQPISTVMTSFLKIMKDHGYIKDFQVYDPHRVGKITVELQGRINDCRALTYRQDLKAKDIEKYTANKLPTRQWGYVVITTPNGVLDHEEAAQQNVGGQVLGYFY* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0232 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 128 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vvi9g0232 129 FunFam 40S ribosomal protein S15a 1 68 - -
Vvi9g0232 129 Gene3D - 69 129 - -
Vvi9g0232 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vvi9g0232 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vvi9g0232 129 Pfam Ribosomal protein S8 6 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vvi9g0232 129 Gene3D - 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0232 Vvi-Chr9 2317188 2319724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0232 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 79.070 5.20e-79 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0232 K02957 - vvi:100249819 265.388