Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0225 ATGGTGCCATGGCTTGTGAGCTTCTTGCTTCTCTTTTGTGCATTCAGGAACATTTGTCACCATGATTCTCCAGATACCCCAGATAGGAGTGTTTCCGAACCTCTACTAGGGAAAAAGCCTGAGAAAAGCTCAGTAGAATTAGGCAAGAGTAGCTTCATTAGTAAATTGACATTTTCTTGGATTAATCCTTTACTTTGCTTGGGTTACTCGAAACCTTTAGTTCTAGAAGACATTCCTTCTCTGGTATCAGAGGATGGAGCTGAATTAGCCTACCAAAAATTTGCTCATGCATGGGAACAGCTTCAAAAGGAGAAAACCCCGAATAATAGCTGTAACTTGGTTCTACAAGCATTAGCCCGGGTCTACTGGAAAGAAACCCTTTCTGCAGGGATTTTTGCTTTGTTTAAGACAATTTCTGTAGTGGTTTCTCCTCTGTTGCTCTATGCTTTTGTAAAATACTCAAATCATAGTGGGGAAAATTGGCATGAAGGCGTGTTCTTAGTGGGGTGTCTAGTCCTTAACAAGCTGGTTGAATCCTTGTCTCAAAGGCATTGGTTCCTTAATTCTAGGAGGTCTGGGATGAGGATGAGGTCATCTTTAATGGTGGCTGTATACCAAAAGCAGCTCAAGCTTTCAAGTTTGGGAAGGGGAAGGCATTCAACTGGGGAGATTGTGAATTATATTGCTATCGATGCTTATCGAATGGGCGAATTCCCTTGGTGGTTCCACACAATGTGGAGTTTCATCTTGCAACTTTTTCTGTCCATTGGAGTCCTTTTTGGGATTGTGGGTCTTGGTGCTCTTACAGGTTTAGTCCCTCTTCTCATTTGTGGACTTCTTAATGTGCCATTTGCTAAGATAATACAGAGGTGTCAATTCCAATTTATGATGGCCCAAGACCAGCGACTCAGGTCTACTTCAGAGATCCTTAACAGTATGAAAGTCATCAAGTTACAGTCATGGGAAGAGAAATTCAAAAACTTGATTGAATCCCTGCGAGACATCGAATTCAAATGGTTGGCTGAAGCACATTATAAGAAGTGTTATTGCACTGTACTGTATTGGTTGTCCCCAAGCATCATCCCTTCGGTTATCTTCCTGGGGTGTGTGGTTTTCAGGAGTGCCCCACTAGATGCCAGCACAATATTCACCGTTCTTGCAGCATTGCGGTGCATGTCAGAACCTGTGAGAACCATACCTGAAGCTCTATCTGCTTTGATCCAAATCAAGGTCTCTTTTGATAGGCTCAATGCATTCCTGCTAGATGATGAGGTCAAAAGTGAAGAAATCAGGAAAGTTGTAGTACCAAATTCACATTACAGTGTTATAGTGAATGGTTGTGGTTTCAGTTGGGACCCGAAATCGACCATCCTAACACTCAGAGATGTAAATATGGAAGTAAAATGGGGGCAGAAGGTTGCGGTTTGTGGGCCAGTTGGAGCAGGGAAATCGTCACTCTTATATGCTATACTTGGAGAGATACCAAAAGTTTCAGGAACCGTTGATGTATTTGGTTCAATCGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACAATTCGCGACAACATTCTTTATGGAAGGCCAATGGATAAAACCAAGTATGAGAAAGCCATAAAAGCATGTGCCTTAGATAAGGATATAAATAGTTTTGACCATGGCGATTTAACAGAAATTGGTCAGAGAGGGCTTAATATGAGTGGAGGACAGAAACAGAGGATTCAACTTGCTCGAGCTGTCTACAATGATGCCAATATCTACCTCCTGGATGACCCTTTTAGTGCAGTAGATGCACATACAGCTGCAGTTCTTTTCAATGATTGCATCATGTCTGCTCTAGCTCAAAAGACTGTTATTCTTGTGACTCATCAAGTGGAATTTCTATCTGCAGTTGATAAAATTCTGGTAATGGAAGGTGGACAAATAACTCAGTCAGGAAGCTATGAGGAGCTTTTTGCAGCAGGGACGGCATTTGAACAGCTTGTAAATGCTCATAAGAATGCAACAACAGTTATGAATCTTTCAAATAAAGAAATCCAAGAAGAACCTCACAAGTTGGATCAGAGCCCTACCAAAGAAAGCGGTGAAGGGGAGATTTCCATGAAGGGTCTACAAGGAGTGCAGCTTACCGAAGAAGAAGAGAGAGAGATTGGTGATGTTGGGTGGAAGCCTTTCTTGGATTATCTCCTTGTCTCAAAGGGATCATTCCTTCTGTTTTTATGTATAATAACCAAGTCTGGTTTTATTGCCCTTCAGGCTGCTTCAACTTATTGGCTAGCACTAGCCATTGAAATGCCAAAAATCAGCAATGGCATGCTAATTGGAGTTTATGCTGGACTGTCAACACTAAGTACTGGCTTTATATATCTGAGGTCTTTCTTTGGAGCCCGTCTAGGATTAAAAGCTTCTAAGGCCTTCTTTGCAGGTTTTACCAACTCCATCTTCAAAGCTCCAATGCTCTTTTTTGACTCTACCCCAGTTGGGCGCATTCTGACTCGAGCTTCCTCAGATTTGAGCGTTTTGGATTTCGATATACCTTTCTCCATTATCTTTGTAGTAGCATCTGGTCTTGAGCTTCTATCGATCATTGGAGTTACAGCCTCAATCACTTGGCCAGTTCTCATTGTGGCCATTTTTGCTATTGTAGCTGTATATTATGTTCAGGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCACTATAAGGGCTTTTAACATGGTGGACAGGTTCTTCCAAAACTACCTAGAGCTCATAGAGACGGACGCAAAGCTGTTCTTCTATTCTAATGCAGCCATTGAATGGCTAGTTTTAAGAATAGAAATCCTCCAGAATCTGACTCTAGTCACTGCTGCTCTTCTTCTTGTTCTACTTCCGAAGGGATATGTAGCTCCAGGGCTTGTGGGGCTCTCTCTTTCTTATGCTCTGGCACTGACTGGTACACAAGTCTTCTTCTCTCGATGGTATTGTAACTTATCAAATTATGTTGTTTCAGTTGAAAGGATCAAACAGTTCATGCACATACCATCAGAGCCCCCTGCAATTGTGGAGGAAAAAAGGCCACCAACTTCATGGCCTTCCAAGGGTAGGATAGACTTGCAATATCTGAAAATAAAATACCGCCCTAATGCTCCTCTAGTTCTCAAAGGAATTACTTGCACGTTTAAGGAGGGGACTAGAGTAGGAATTGTTGGAAGGACTGGAAGTGGCAAAACTACGCTGATAAGTGCTTTGTTCCGACTAGTAGAGCCTGAAAGTGGGAAAATCTTCATAGATGGACTTGACATTTGTTCCATAGGCCTGAAGGATTTGAGGATGAAGCTTAGCATTATCCCTCAGGAGCCCACTCTTTTCAAGGGTAGCATTCGAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATGTGAGCGATGAAGGTGAGAATTGGAGTGCCGGGCAACGCCAGCTCTTCTGTCTTGGAAGAGTCCTCCTTAAGAGAAATAGAATTCTAGTTCTAGACGAAGCCACTGCATCCATAGATTCTGCCACTGATGCAATTCTACAAAGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCTCTTTTTCAAAACTTGTAGCTGAATACTGGTCCAGTTGCTGGAGGAACTCCTCCCAGAGCTTCAATTACTACAAACAGAGGTCTTAA 3924 0.4251 MVPWLVSFLLLFCAFRNICHHDSPDTPDRSVSEPLLGKKPEKSSVELGKSSFISKLTFSWINPLLCLGYSKPLVLEDIPSLVSEDGAELAYQKFAHAWEQLQKEKTPNNSCNLVLQALARVYWKETLSAGIFALFKTISVVVSPLLLYAFVKYSNHSGENWHEGVFLVGCLVLNKLVESLSQRHWFLNSRRSGMRMRSSLMVAVYQKQLKLSSLGRGRHSTGEIVNYIAIDAYRMGEFPWWFHTMWSFILQLFLSIGVLFGIVGLGALTGLVPLLICGLLNVPFAKIIQRCQFQFMMAQDQRLRSTSEILNSMKVIKLQSWEEKFKNLIESLRDIEFKWLAEAHYKKCYCTVLYWLSPSIIPSVIFLGCVVFRSAPLDASTIFTVLAALRCMSEPVRTIPEALSALIQIKVSFDRLNAFLLDDEVKSEEIRKVVVPNSHYSVIVNGCGFSWDPKSTILTLRDVNMEVKWGQKVAVCGPVGAGKSSLLYAILGEIPKVSGTVDVFGSIAYVSQTSWIQSGTIRDNILYGRPMDKTKYEKAIKACALDKDINSFDHGDLTEIGQRGLNMSGGQKQRIQLARAVYNDANIYLLDDPFSAVDAHTAAVLFNDCIMSALAQKTVILVTHQVEFLSAVDKILVMEGGQITQSGSYEELFAAGTAFEQLVNAHKNATTVMNLSNKEIQEEPHKLDQSPTKESGEGEISMKGLQGVQLTEEEEREIGDVGWKPFLDYLLVSKGSFLLFLCIITKSGFIALQAASTYWLALAIEMPKISNGMLIGVYAGLSTLSTGFIYLRSFFGARLGLKASKAFFAGFTNSIFKAPMLFFDSTPVGRILTRASSDLSVLDFDIPFSIIFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGYYLASARELIRINGTTKAPVMSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYSNAAIEWLVLRIEILQNLTLVTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWYCNLSNYVVSVERIKQFMHIPSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLKGITCTFKEGTRVGIVGRTGSGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWEALEKCQLKATISSLPNLLDSYVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTLIDSDMVMVLSYGKLVEYDEPSNLMETNSSFSKLVAEYWSSCWRNSSQSFNYYKQRS* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0225 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1043 1286 IPR027417 -
Vvi9g0225 1307 FunFam Multidrug resistance protein associated1 421 685 - -
Vvi9g0225 1307 Pfam ABC transporter 460 594 IPR003439 GO:0005524
Vvi9g0225 1307 Gene3D ABC transporter type 1, transmembrane domain 703 1034 IPR036640 GO:0005524|GO:0016020
Vvi9g0225 1307 SUPERFAMILY ABC transporter transmembrane region 736 1035 IPR036640 GO:0005524|GO:0016020
Vvi9g0225 1307 CDD ABC_6TM_ABCC_D1 129 416 IPR044746 GO:0140359
Vvi9g0225 1307 FunFam ABC transporter C family member 10 110 424 - -
Vvi9g0225 1307 SUPERFAMILY ABC transporter transmembrane region 115 422 IPR036640 GO:0005524|GO:0016020
Vvi9g0225 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 129 408 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0225 1307 FunFam ABC transporter C family member 5 702 1034 - -
Vvi9g0225 1307 ProSitePatterns ABC transporters family signature. 567 581 IPR017871 GO:0005524|GO:0016887
Vvi9g0225 1307 Pfam ABC transporter transmembrane region 133 387 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0225 1307 Pfam ABC transporter transmembrane region 773 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0225 1307 Gene3D - 1036 1287 IPR027417 -
Vvi9g0225 1307 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 49 1289 - -
Vvi9g0225 1307 CDD ABCC_MRP_domain1 442 642 - -
Vvi9g0225 1307 FunFam ABC transporter C family member 3 1036 1287 - -
Vvi9g0225 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 665 IPR027417 -
Vvi9g0225 1307 Gene3D ABC transporter type 1, transmembrane domain 115 417 IPR036640 GO:0005524|GO:0016020
Vvi9g0225 1307 Coils Coil 318 338 - -
Vvi9g0225 1307 SMART AAA_5 1079 1271 IPR003593 GO:0016887
Vvi9g0225 1307 SMART AAA_5 469 642 IPR003593 GO:0016887
Vvi9g0225 1307 Gene3D - 418 689 IPR027417 -
Vvi9g0225 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 425 665 IPR003439 GO:0005524
Vvi9g0225 1307 CDD ABCC_MRP_domain2 1051 1271 - -
Vvi9g0225 1307 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 740 1016 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0225 1307 Pfam ABC transporter 1070 1218 IPR003439 GO:0005524
Vvi9g0225 1307 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1055 1287 IPR003439 GO:0005524
Vvi9g0225 1307 CDD ABC_6TM_ABCC_D2 735 1028 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0225 Vvi-Chr9 2228879 2233809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0225 449 656 Calmodulin-binding Proteins AT2G36910 29.730 6.24e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0225 - - vvi:100241282 2554.63