Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0223 ATGAGTAAGGATCAGAAGAGAGGGAAGCAGGAGAAATCCTCGGAGGCTGCCGAGAAGGTGGTTGTTGCGGTGAAGGCGTCGAGAGAAATCCCGAAAACTGCTCTGGTATGGGCCTTAACTCATGTTGTGCAGCCTGGGGATTGCATTACTCTGCTTGTTGTCGTCCCTGCACAAAGCCCAGGTAGAAAATTATGGGGTTTCCCAAGATTTGCAGGGGACTGTGCGAGCGGTCACCGGAAATCTCATTCAGGAGCAAGTTCAGAGCAGAAATGTGAGATTACAGATTCTTGTTCACAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAACAAGATAAATGTCAAGATAAAGATTGTCTCTGGATCACCATGTGGAGCAGTTTCTGGAGAGGCCAAAAGAACAGAAGCTAATTGGGTTGTATTGGATAAGCAGCTCAAACATGAGGAAAAATGCTGCATGGAGGAGCTGCAATGCAACATTGTGGTTATGAAGCGCTCCCAACCTAAAGTTCTCCGCTTGAATTTGGTTGGATCACCTAAGATGGAATCTGAAACAGCCTGTCAATTGCCTTCTGAACCAGGTGAAACAGCTGAAAAACATTCTAAAACCAAGAATGACTCGATGAAGTCCATTCGGGGGCCAGTTGTGACTCCAAGCAGTAGTCCGGAGTTGGGGACACCATTCACTGCAACTGAAGTTGGAACTTCATCAGTATCAAGCTCAGATCCAGGAACCTCACCATTCTTCAACTCCGAAGTGAATGGAGACCTAAAGAAAGAGGAATCATCACATACAAAAGAAAATTTGGATCTTGATGAATCTAGTTCAGACACTGACAATGAAAATTTATCTCCATCTTCAAGTGTTGGGTTCCAACCTTGGATGGCAGGTGTTCTCACTTCTCATCATCAATCCTCACAACATATTGAACAAAGTTCAAAGAAATCCAGGGATAAGACTCAACCTCCCACGTCTAAAGCTTTGCTAGATAAGTTCTCAAAAATTGATCGTGATGCTAGAATTGGAATGATGAACTATAGGTCAGAACTGGACTTCAGTGGGAACGTTAGAGAAGCAATTTCATTATCCAGAAATGCGCCTCCTGGTCCACCTCCATTGTGTTCAATATGTCAACACAAGGCTCCTGTATTTGGAAAGCCCCCAAGGTGGTTCAGCTATGCCGAGCTGGAGCTTGCTACTGGTGGATTTTCACAAGCTAATTTCTTGGCAGAAGGCGGGTTTGGATCTGTCCACAGAGGGGTCCTACCTGATGGCCAAGCAGTTGCTGTGAAGCAACACAAATTGGCTAGTTCTCAGGGTGATGTTGAATTTTGCTCAGAAGTGGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTGGTTTATGAATATATATGCAATGGCTCACTGGATTCTCATCTATATGGACGCCATCGAGATCCACTAGAATGGTCTGCTCGACAAAAAGTTGCTGTTGGAGCTGCTCGAGGTCTGCGTTATCTTCATGAAGAATGCAGAGTGGGTTGCATTGTCCACCGTGACATGCGACCCAACAACATCCTCATCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGCCTGGCTAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACAAGAGTAATTGGAACATTTGGGTAA 1713 0.4542 MSKDQKRGKQEKSSEAAEKVVVAVKASREIPKTALVWALTHVVQPGDCITLLVVVPAQSPGRKLWGFPRFAGDCASGHRKSHSGASSEQKCEITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVSGEAKRTEANWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKMESETACQLPSEPGETAEKHSKTKNDSMKSIRGPVVTPSSSPELGTPFTATEVGTSSVSSSDPGTSPFFNSEVNGDLKKEESSHTKENLDLDESSSDTDNENLSPSSSVGFQPWMAGVLTSHHQSSQHIEQSSKKSRDKTQPPTSKALLDKFSKIDRDARIGMMNYRSELDFSGNVREAISLSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQAVAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGYCIEDRRRLLVYEYICNGSLDSHLYGRHRDPLEWSARQKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFG* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0223 570 MobiDBLite consensus disorder prediction 182 328 - -
Vvi9g0223 570 Gene3D Transferase(Phosphotransferase) domain 1 480 570 - -
Vvi9g0223 570 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 376 479 - -
Vvi9g0223 570 Pfam Protein tyrosine and serine/threonine kinase 408 554 IPR001245 GO:0004672|GO:0006468
Vvi9g0223 570 MobiDBLite consensus disorder prediction 255 274 - -
Vvi9g0223 570 PANTHER OS01G0750732 PROTEIN 151 570 - -
Vvi9g0223 570 FunFam Dual-specific kinase DSK1-like 11 165 - -
Vvi9g0223 570 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Vvi9g0223 570 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vvi9g0223 570 Gene3D HUPs 3 179 IPR014729 -
Vvi9g0223 570 MobiDBLite consensus disorder prediction 279 308 - -
Vvi9g0223 570 ProSiteProfiles Protein kinase domain profile. 404 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0223 570 MobiDBLite consensus disorder prediction 209 253 - -
Vvi9g0223 570 SUPERFAMILY Protein kinase-like (PK-like) 389 569 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0223 Vvi-Chr9 2188823 2191848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0223 385 570 Trihelix Transcription Factor Family AT1G26150 51.613 4.52e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi9g0223 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0223 - - vvi:100244602 1134.4