Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0220 ATGCAACATATCTCATTATATTGTTTGAAGTCTAGAGCCATGGGGAGAAAGCACAAGTTCTTCCATGGAACACTTGAAGCTACCATCTTCCATGCCACTCCTTACACTCCTTCATTCCCCTTCAATTGTATGTTTCTGAATGGAAAGGCTTGCTATGTGACTATCAAGATAGACGACAAGAAGGTTGCGAAGACGAGCCATGAAAGCGACCGTGTTTGGAACCAAACTTTCCAGATCTTATGTGCCCATCTGATTGATTCAACTATCACCATTACTTTGAAGACAAAGTGCTCCATCTTGGGGAGAATCCAAATCCAGGCTCATCAGATAGTACACGAAGCAAGTTTCATTGACGGGTACTTCCCCCTACTCATGGAAAATGGAAGGCCCAATCCAGAGCTCAAGCTCAGGTTCATGTTATGGTTTAGACCAGCAGAGTTTGAACCAACATGGGGGAATATACTCTGGAATGGTGACTTCCAGGGTGTAAAGAATGCTACATTTCCACAAAGATCAGACTGCAGTGTCATACTTTATCAGGATGCCCACCATTGCTCTACTTTTCAACCGCCATATAGTCTCTGTAAGGCCCCTAGGAAGCTTTGGGAGGATGTATACAAAGCCATTGATGATGCAAAGTACTTGATATACATTGCAGGCTGGTCTTTCAATCCAAAAATGGTGCTGGTTCGTGATCCTCAGACTGATATTCCATATGGACATGGAGTAAAGCTTGGTGAGTTACTGAAGCGGAAAGCTGAGGAAGGTGTGGCTGTGAGAATCATGGTTTGGGATGATGAAACGTCACTGCCACTCATCAAGAACGAAGGAGTCATGAGTACACACGATGAAGAGGCCTTTGCCTACTTCAAACATACAAAAGTGGTATGCAAATTGTGTCCCAGGTTACACTTCAAGTTCCCAACACTCTTTGCTCATCATCAGAAGACCATAACTGTAGACAGCCGGTCATCGATCTCCCCAAGTCATCGAGAAATCATGAGCTTTGTTGGCGGTTTAGATCTCTGCAATGGTCGCTATGATACAGAAGAACACTCCTTGTTTAGGACCCTTAATACAGAATCCCATTCTCAAGACTTCTACCAGACAAGCCTTATTGGAGCCTGCCTTCAAAAAGGGGGGCCAAGGGAGCCATGGCATGATGCTCATGCTTGTATTACTGGAGAAGCAGCCCGGGACGTGCTGACCAATTTTGAGCAGCGATGGAGTAAGCAATGTAACCCCTCTTTGCTAGTCCCCATTGGCACAATAACAGAGCTTGCAAGCATCCCCTCTGAAAGGGATTGGAAAGTACAGGTTTATCGCTCAATTGACCATGTGTCAGCAAGTCATCTGCCAAGAAACTTTGCTGTGGAGCAAAGCATCCATGAAGCTTATGTAGAAGCAATTCGGCGGGCTGAGAGGTTTATATACATCGAGAACCAGTACTTCATTGGGGGCTGCCATTTGTGGGAGAAAGACCAACATGCTGGCTGCAGAAACTTAATCCCTATCGAGATTGCACTTAAGGTGGCAAGCAAGATCAGAGCCAAGGAAAGATTTGCAGTGTATATCCTGATACCAATGTGGCCAGAAGGGGCACCAGAGAGTGAACCAGGTCAGGATATACTCCACTGGACTAGAGAAACAATGGCCATGATGTATAGGCTAATTGGAGAAGCTATAGACGAAAATGGCGGTTCAGGGCACCCTAGAGATTACTTGAACTTCTTCTGCCTTGCCAACAGAGAAGAGAAGGGCAAAGGGGAGTATGCTTCTCCACATCCTCCTCATCCTGCAACACAGTACTGGAATGCTCAGAAACATAGGAGATTCATGGTCTATGTCCATTCCAAGCTGATGATAGTGGACGACACATACATATTGATAGGATCTGCAAATGTGAACCAGCGGTCCATGGATGGGCAGCGCGACACTGAGATTGCAGTAGGCTGCTACCAGTCCAAAAATGGTGAAAATGAAATGTGTCGTGGGGATATTCATGCATACAGAATGTCACTGTGGTATGAACATACTGGTCTAGTTGAAGTAGTGTTCCAAGAGCCTCAAAGTCTGGAATGCGTTGAGAGACTCCGTTTCATTGGAGAGAAAATGTGGGGAATTTACAGTGCAGAAGAGGTAGAAGACATGGAAGGTGTCCACCTAGTGACCTACCCCGTGACTGTAACAAAGGATGGTTCTGTTGAGGATCTTGCAGAAGGTGGCAACTTTCCAGACACAAACACTCCAATAAGAGGGAGGAGATCCAGAGTTCTACCACCTATTTTCACCACATAA 2298 0.4552 MQHISLYCLKSRAMGRKHKFFHGTLEATIFHATPYTPSFPFNCMFLNGKACYVTIKIDDKKVAKTSHESDRVWNQTFQILCAHLIDSTITITLKTKCSILGRIQIQAHQIVHEASFIDGYFPLLMENGRPNPELKLRFMLWFRPAEFEPTWGNILWNGDFQGVKNATFPQRSDCSVILYQDAHHCSTFQPPYSLCKAPRKLWEDVYKAIDDAKYLIYIAGWSFNPKMVLVRDPQTDIPYGHGVKLGELLKRKAEEGVAVRIMVWDDETSLPLIKNEGVMSTHDEEAFAYFKHTKVVCKLCPRLHFKFPTLFAHHQKTITVDSRSSISPSHREIMSFVGGLDLCNGRYDTEEHSLFRTLNTESHSQDFYQTSLIGACLQKGGPREPWHDAHACITGEAARDVLTNFEQRWSKQCNPSLLVPIGTITELASIPSERDWKVQVYRSIDHVSASHLPRNFAVEQSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDQHAGCRNLIPIEIALKVASKIRAKERFAVYILIPMWPEGAPESEPGQDILHWTRETMAMMYRLIGEAIDENGGSGHPRDYLNFFCLANREEKGKGEYASPHPPHPATQYWNAQKHRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGQRDTEIAVGCYQSKNGENEMCRGDIHAYRMSLWYEHTGLVEVVFQEPQSLECVERLRFIGEKMWGIYSAEEVEDMEGVHLVTYPVTVTKDGSVEDLAEGGNFPDTNTPIRGRRSRVLPPIFTT* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0220 765 PANTHER PHOSPHOLIPASE D 21 747 IPR015679 -
Vvi9g0220 765 SUPERFAMILY Phospholipase D/nuclease 190 440 - -
Vvi9g0220 765 PIRSF PLD_plant 10 765 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi9g0220 765 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 139 IPR035892 -
Vvi9g0220 765 Pfam C2 domain 50 114 IPR000008 -
Vvi9g0220 765 Pfam Phospholipase D C terminal 685 754 IPR024632 -
Vvi9g0220 765 Pfam Phospholipase D Active site motif 310 346 IPR001736 GO:0003824
Vvi9g0220 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 309 346 IPR001736 GO:0003824
Vvi9g0220 765 CDD PLDc_pPLD_like_2 454 656 - -
Vvi9g0220 765 Gene3D Endonuclease Chain A 424 660 - -
Vvi9g0220 765 Gene3D Endonuclease Chain A 181 423 - -
Vvi9g0220 765 SMART pld_4 309 346 IPR001736 GO:0003824
Vvi9g0220 765 SMART pld_4 612 639 IPR001736 GO:0003824
Vvi9g0220 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 639 IPR001736 GO:0003824
Vvi9g0220 765 SUPERFAMILY Phospholipase D/nuclease 431 694 - -
Vvi9g0220 765 Pfam PLD-like domain 613 648 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0220 Vvi-Chr9 2169387 2171944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0220 43 765 Phospholipase D Gene Family (Wang group) AT1G55180 63.038 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0220 K01115 - vvi:100256679 1602.42