Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0216 ATGGATGATCTTCCAGAATTCAGGCTTTTTGAGAATGACCTAGACCACAACCACCGACATTCTTCCGGGCGTGGAATCGAACCGATCAATAGTGTAGATAGTGAAGGTATTGGCATACAGCAGCTGGTCGATGTTCGCAATTCGTACTCTGGAAAACTTTTTGTTGGCGGCATTTCGTGGGAGACAAGTGAAGAGATATTCACCAATTACTTCAGCAACTATGGAGAAATCACAGATTCTGTTATAATGATGGATAGACATACCGGAAGGCCACGAGGCTTTGGATTTATAACATTTGCTGATCCAGCTGTGGCTGATAAGGTTTTGGAGGAAGATCATGTTATAGATGGCAGAGCAGTTGAAGTGAAGAAGACTGTCCCTAGAGAGGGTATGGAAGTTAGAGGGGTATCAAAAACAAGAAAGATTTTTGTGGGTGGAATACCATCATCTTTAACGGAAGATGAGTTGAAGGACTACTTCTCTTCATATGGTGCCATTGTTGAGAACCAGATTATGTTGGATCATGTAACCGGGCGGTCAAGGGGCTTTGGATTTGTCACTTTTGTGAGTGAAGATGCTGTTGAAAGGCTTTTCTCTGAGGGAAAAACTCATGAACTTGGAGGAAAACTGGTGGAAATAAAGAAGGCTGAACCAAAAAGAGCTGGTGCCGAGTACAATGCTGGTGCGGCAAAGTTCTATGGTGGCAGGAATGGTTCTCAAGGTGGACATGGGGGAAAAATGGGTGGAGGGGATGCTGGCTATGGTGGCTACACTAGCTATGGTGGATATGACAGTTATGGTATGGGATATGGTGGAGTTGCAGCTGGTTTTTATGGTGCTTACTGTAACCCAGATGGGTATGGCAGATATATGTATGGATATGGGTTTGGTGCCCCCATGTATGGCTGCACTGGTTATGGGACTCTTAATGGTTATGGTGGTGCTATTGCTACTGGGTATGGTGGTGGTGGTGGTAAAGGGTATGGAAATGGCATTGGACATGGCGGGGGTAAAGGACATCTGGGCGGGAATACTGTGACCGGAAGATACCATCCTTACTGA 1062 0.4539 MDDLPEFRLFENDLDHNHRHSSGRGIEPINSVDSEGIGIQQLVDVRNSYSGKLFVGGISWETSEEIFTNYFSNYGEITDSVIMMDRHTGRPRGFGFITFADPAVADKVLEEDHVIDGRAVEVKKTVPREGMEVRGVSKTRKIFVGGIPSSLTEDELKDYFSSYGAIVENQIMLDHVTGRSRGFGFVTFVSEDAVERLFSEGKTHELGGKLVEIKKAEPKRAGAEYNAGAAKFYGGRNGSQGGHGGKMGGGDAGYGGYTSYGGYDSYGMGYGGVAAGFYGAYCNPDGYGRYMYGYGFGAPMYGCTGYGTLNGYGGAIATGYGGGGGKGYGNGIGHGGGKGHLGGNTVTGRYHPY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0216 353 SUPERFAMILY RNA-binding domain, RBD 46 131 IPR035979 GO:0003676
Vvi9g0216 353 SUPERFAMILY RNA-binding domain, RBD 138 249 IPR035979 GO:0003676
Vvi9g0216 353 Gene3D - 133 263 IPR012677 -
Vvi9g0216 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 50 131 - -
Vvi9g0216 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 46 353 - -
Vvi9g0216 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 127 IPR000504 GO:0003723
Vvi9g0216 353 SMART rrm1_1 52 123 IPR000504 GO:0003723
Vvi9g0216 353 SMART rrm1_1 141 214 IPR000504 GO:0003723
Vvi9g0216 353 CDD RRM1_hnRNPA_hnRNPD_like 53 123 - -
Vvi9g0216 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 209 IPR000504 GO:0003723
Vvi9g0216 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 111 IPR000504 GO:0003723
Vvi9g0216 353 Gene3D - 50 132 IPR012677 -
Vvi9g0216 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Vvi9g0216 353 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 132 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0216 Vvi-Chr9 2149726 2152813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0216 51 219 Eukaryotic Initiation Factors Gene Family AT3G16380 25.581 3.63e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0216 K12741 - vvi:100266965 571.622