Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0211 ATGTCTAATTTGACTTCAGCATCTGGTGAAGCAAGTGTTTCTTCTGGAAATAGAGCTGAAACTGCCCCCATGTATCCTCAACAACAATACTTTGCTCCACCAAATCAAGCTCAAGCTCAAGTTCAAGCTCAGCCTTCAGTGAAGAAGAAGAGAAACCTGCCAGGAAACCCAGACCCAGATGCAGAAGTGATAGCTTTGTCACCCAAAACACTCATGGCAACAAACAGATTTGTGTGTGAGATCTGCAACAAAGGGTTCCAGAGGGACCAGAATCTTCAGCTTCATAGAAGAGGGCATAATCTTCCATGGAAACTGAAGCAAAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAAGCCAGTTGTGTGCACCATGACCCATCAAGAGCTCTAGGGGACCTGACAGGAATCAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGAGGTATGCAGTTCAATCAGACTGGAAAGCTCACTCCAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATAACTCACAGAGCTTTCTGTGATGCTTTGGCAGAGGAGAGTGCAAGGGCAATCACTGGGAACCCAGTTCTACTTTCCTCACAAGCTGCTGCAGGGCCATCATCATCAACACCCCATTCTCATTCTCAGATGAGCCTCCAGCAACAACAACAATTCAACAGCAACCATGATTTCCATGCATTTCAGATGAAGAAAGAGCAGCAAAGTTTCAGTATAAGGTCTGAGGTGGTACCACCATGGCTTTCATCATCTTCTTCATTGTTCCCAACAAGGTTAGACCATGACTTCACACAGACAACCCAAGATTTGGCTCTCCATGACATTCAAAACCCTAACCCTAACCCTAGCCTTGGCCCCACTCTTCCTCCATACCATCCAACACTCTCCCCACACATGTCTGCTACTGCATTACTGCAAAAGGCAGCTCAAATGGGTGCAACAATGAGCAAGACTACTGGTGGTTCTGGTGCTTCACCACCAGCCATGATCAGACCCCACCAAGCTCACGTGTCTGCTGATCACTCTTGTAACAATACAACTGGTTTTGGGTTGAATTTGTCTTCACGTGAAGAGATGGGTGGTGGGTTTGTCCAAGGCTTGGCCCCTTTTGGGAATAAAGCTGCTGCAGTTCCTTCTGCTGCTGCAGCTGCAGCTGCTGCTACAGGCCCAGGTGGTGGTGCTCCATCTCCTTCTCTTCTTCTTCAAGACATGATGACTTCTCTGTCTTCTGCAACTGGGTTTGACTCCTCCTCCTTTGAAGATGCTTTTGGTGGTATGCTGAATTCAAGGAAAAATGGCAACAATCTCCACCAAACTCTTCCATCAAAATCAACAACCACCACCGCCACCACCCACCATAGCAGTGGTGGTGCTGGAAATGATGGTTTGACAAGAGATTTTCTGGGTCTAAGAGCTCTCTCCCACAGCGACATTCTCAGTATAGCTGGCCTTGGAACCTGCATGAACACCTCTCCCCATGATCATCAGAATCAGACCCAAAAGCCATGGCAAGGTTAG 1599 0.4728 MSNLTSASGEASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGNPVLLSSQAAAGPSSSTPHSHSQMSLQQQQQFNSNHDFHAFQMKKEQQSFSIRSEVVPPWLSSSSSLFPTRLDHDFTQTTQDLALHDIQNPNPNPSLGPTLPPYHPTLSPHMSATALLQKAAQMGATMSKTTGGSGASPPAMIRPHQAHVSADHSCNNTTGFGLNLSSREEMGGGFVQGLAPFGNKAAAVPSAAAAAAAATGPGGGAPSPSLLLQDMMTSLSSATGFDSSSFEDAFGGMLNSRKNGNNLHQTLPSKSTTTTATTHHSSGGAGNDGLTRDFLGLRALSHSDILSIAGLGTCMNTSPHDHQNQTQKPWQG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0211 532 SMART c2h2final6 118 148 IPR013087 -
Vvi9g0211 532 SMART c2h2final6 77 99 IPR013087 -
Vvi9g0211 532 SMART c2h2final6 153 173 IPR013087 -
Vvi9g0211 532 MobiDBLite consensus disorder prediction 457 489 - -
Vvi9g0211 532 MobiDBLite consensus disorder prediction 1 49 - -
Vvi9g0211 532 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Vvi9g0211 532 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Vvi9g0211 532 Gene3D Classic Zinc Finger 56 127 - -
Vvi9g0211 532 MobiDBLite consensus disorder prediction 1 61 - -
Vvi9g0211 532 Gene3D Classic Zinc Finger 128 210 - -
Vvi9g0211 532 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vvi9g0211 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 504 IPR031140 -
Vvi9g0211 532 FunFam protein indeterminate-domain 12-like 56 124 - -
Vvi9g0211 532 MobiDBLite consensus disorder prediction 222 245 - -
Vvi9g0211 532 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Vvi9g0211 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Vvi9g0211 532 MobiDBLite consensus disorder prediction 457 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0211 Vvi-Chr9 2108644 2110751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0211 1 532 IDZ Gene Family AT3G13810 46.632 1.85e-142 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi9g0211 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0211 K25870 - vvi:109123222 994.186