Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0206 ATGAGCGTTCCAAGGATTGGTAACGGTACCCAAGCTTGCGAGGCTTGCAAATACCAACGTAGAAAATGCGCCCCTGACTGCATTCTCGCCCCTTATTTTCCTCACGGTCGCCAGCGCCAGTTCCTCAACTGCCATAAATTGTTTGGGGTCAGCAACATCACCAAGATCATCCGCAACCTCCACCCTCCTGACAAGGACGAGGCCATGCGCACCATCATTTTCCAGTCTGACGTCCGCGCCTCCGACCCCGTCGGCGGTTGCTACCGTATCATCCGTGACCTCCAGCGCCAGATCGAGTACACCAAGGCGGAGCTCGACCTTGTCCTCCATCACTTGGCCATATGCCGCGCCACCCACCAACAGCAACAGGCCAGCATACCGGAATCCCCATCGTCCATTTCCATTGATCCTGATCCTTTGAGTTCGTATTACCATCATCAGCAGCATCATCTTCTTCATCCCCATCCTCATGATTACGTGGTGCAACAAAAGCAGAACCAGGATATCAATGCATGGGTCATGCATGATGTCGATTCTTTGCACGTAAAAGACGGCGGGTTTGTTGATGTTGATGATATTAAGCCGCTTCTTGATATCAATGGGGATGGTGATGATGGCGTCGATGTCGATCACAGAAGGTTTGTACGTGGTGCCCTTCTTCAATCATGTTGA 672 0.5179 MSVPRIGNGTQACEACKYQRRKCAPDCILAPYFPHGRQRQFLNCHKLFGVSNITKIIRNLHPPDKDEAMRTIIFQSDVRASDPVGGCYRIIRDLQRQIEYTKAELDLVLHHLAICRATHQQQQASIPESPSSISIDPDPLSSYYHHQQHHLLHPHPHDYVVQQKQNQDINAWVMHDVDSLHVKDGGFVDVDDIKPLLDINGDGDDGVDVDHRRFVRGALLQSC* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0206 223 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Vvi9g0206 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 148 - -
Vvi9g0206 223 Pfam Lateral organ boundaries (LOB) domain 12 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0206 Vvi-Chr9 2067058 2067729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0206 11 202 AS2 family AT3G13850 47.115 2.27e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi9g0206 LOB 3.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0206 - - vvi:104880219 381.333