Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0202 ATGTTTTGTGTCTGCAAAGTGCATTTTCATCCACCGGCAGTTGCTCCTTTGGGTTCCTCCCTGAAGAATATGAAGACTCCACCGCCACCACTGGTTTGGACATTACCACCTCCACCTCCTAATGAAGATTGTGCATCATTGACTTGCACAGAACCTTTAACATATACGCCTCCTGGATCACCCTGCGGTTGTGTGTGGCCAATTCAAGTTAAATTGCGCCTTAGTGTAGCACTATATACTTTCTTCCCCTTGGTCTCGGAGCTGGCTGATGAAATTGCTGCTGGTGTTTCACTAAATCATAGCCAGGTTCGCATTATGGGAGCAAATGCAGCCAACCAGCAGCTAGACAAAACTATCATCCTGATCGACTTGGTACCACTTGGAGAAAAATTCAATCATACCACTGCATTTTCAATCTACGAGAAGTTCTGGCTCAAAAAATTTTTTATAAAGACTTCCCTCTATGGTGGATATGAAGCATTATATGTTCGATATCCAGGTCTTCCACCTTCTCCGCCTTCAAGCATTAGTAATATTGATGACGGGTCATACTCAGGCCATGGCAACAATGGAAGGGTAATGAAACCCTTGGGGGTTGATGTGCCTCAGAAACAGAAACATGGGCTTGGAGGAAGTATGATCACTGTGATTGTTTTATCATCTGTGACGGGTTTTGTTATATGCATTGCAGTTGCTTGGGTTTTGGTATTGAAGTGCAGAGGTCATGTTCATCAAGCTGAAGATATTCCACATTCTTTGATTTCCTCCTTTGCAAAACCATCAGGGGCTGCTGGGTCTATGATGTTGGGAAGCAGGACCAGTTCTACATCAGTGTCCTTCAGTTCTGGGGTAGTGACATATACCGGATCTGCTAAGACCTTCAGTTTGAATGACATAGAGAGGGCCACAGATAACTTTGATGCTTCAAGAGTACTAGGAGAAGGTGGTTTTGGTCTTGTCTACAGGGGCATTCTAGATGATGGAGTGGAGGTAGCTGTTAAGGTTCTTAAGAGAGATGATCAGCAGGGTGGCCGAGAGTTCTTGGCAGAAGTTGAGATGCTTAGCCGTTTGCATCATAGGAACTTGGTTAAATTGATTGGCATCTGCACTGAGGAGCATACCCGCTGCCTCGTCTATGAACTTGTTCCAAATGGAAGTGTGGAATCACATTTACATGGAGTTGACAAGGAAGCTTCTCCTCTTGATTGGGGTGCACGAATGAAGATTGCCCTTGGTGCAGCTCGTGGTTTAGCATATCTGCATGAAGACTCTAGTCCTCGTGTTATACATCGGGATTTCAAGTCCAGCAACATCTTGTTAGAACATGACTTTACACCTAAAGTTTCTGACTTTGGTTTGGCTAGAACAGCACTTGACGAGGGGAACAAACATATCTCAACACGCGTGATGGGAACTTTTGGCTACTTAGCTCCAGAATATGCAATGACTGGCCATCTTCTCGTGAAAAGTGATGTTTACAGTTATGGTGTAGTCCTTCTTGAGCTCCTAACAGGAAGAAAGCCAGTGGACTTGTCACAGCCACCAGGTCAAGAAAATCTGGTTGCTTGGGCTCGTCCACTTCTCACAACCAAGGAAGGCCTAGAAACAATCATCGACCCAGCTCTGAAGTCAAGCTCCCCATTCGATAGTGCAGCCAAGGTAGCAGCAATTGCATCAATGTGCGTGCAACCAGAAGTGTCTCACCGTCCTTTCATGGGTGAAGTTGTTCAAGCCTTGAAGCTAGTGTGCAGTGAGTATGATGAGACAAAGGATCTAGCATCAAAAAGTTTCAGCCAAGAGAATTTGTCTATTGATGTAATTAGAAAGAGTAGTAGAGTCTTGGGTGAGCTTCTGGAAGTTTCACAGGTCCATCACCCTGTGGCTGGCCATGATTCAAGTTTTGATACAAAGATGGCGCTATCAGTATCAGATTTGGTGAGTACCTCGATGGGATTTGAGGGTCAAGACTCTGGATCCTTTAGGAGGTACTCGAGCTCAGGGCCTTTGAGCACTGGGAGGAGAAGGGAGTTCTGGCAGAGACTGAGAAGGTCGTCTGGCGGCAGTGCAAGTGAGCATGGATTTTCATTTAAACTATGGCCTCGTTCCAGTTAA 2112 0.4536 MFCVCKVHFHPPAVAPLGSSLKNMKTPPPPLVWTLPPPPPNEDCASLTCTEPLTYTPPGSPCGCVWPIQVKLRLSVALYTFFPLVSELADEIAAGVSLNHSQVRIMGANAANQQLDKTIILIDLVPLGEKFNHTTAFSIYEKFWLKKFFIKTSLYGGYEALYVRYPGLPPSPPSSISNIDDGSYSGHGNNGRVMKPLGVDVPQKQKHGLGGSMITVIVLSSVTGFVICIAVAWVLVLKCRGHVHQAEDIPHSLISSFAKPSGAAGSMMLGSRTSSTSVSFSSGVVTYTGSAKTFSLNDIERATDNFDASRVLGEGGFGLVYRGILDDGVEVAVKVLKRDDQQGGREFLAEVEMLSRLHHRNLVKLIGICTEEHTRCLVYELVPNGSVESHLHGVDKEASPLDWGARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEGNKHISTRVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVAWARPLLTTKEGLETIIDPALKSSSPFDSAAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCSEYDETKDLASKSFSQENLSIDVIRKSSRVLGELLEVSQVHHPVAGHDSSFDTKMALSVSDLVSTSMGFEGQDSGSFRRYSSSGPLSTGRRREFWQRLRRSSGGSASEHGFSFKLWPRSS* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0202 703 FunFam Receptor-like serine/threonine-protein kinase ALE2 382 600 - -
Vvi9g0202 703 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vvi9g0202 703 Gene3D Transferase(Phosphotransferase) domain 1 382 604 - -
Vvi9g0202 703 CDD STKc_IRAK 312 580 - -
Vvi9g0202 703 PANTHER OS01G0750732 PROTEIN 36 607 - -
Vvi9g0202 703 ProSiteProfiles Protein kinase domain profile. 306 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0202 703 FunFam receptor-like serine/threonine-protein kinase ALE2 279 381 - -
Vvi9g0202 703 SUPERFAMILY Protein kinase-like (PK-like) 285 579 IPR011009 -
Vvi9g0202 703 Pfam Protein tyrosine and serine/threonine kinase 309 579 IPR001245 GO:0004672|GO:0006468
Vvi9g0202 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vvi9g0202 703 Gene3D Phosphorylase Kinase; domain 1 279 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0202 Vvi-Chr9 2035377 2039099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0202 41 693 Receptor kinase-like Gene Family AT5G56890 64.545 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vvi9g0202 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0202 - - vvi:100263472 1347.41