Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0189 ATGAGCCGCTACGATGGTCGCTCCGGCGACCCCGGTTCGTACCGTGACCGGAGGAGTGAATCAGGGTTTGGTGGGGCTTCTGGATATGGTAGTGGTGGTGTTCGCTCATCCTCAAGCAAGAGAGATCTTGATGGGGTAGAGTCACCAAGGAAGCCGGATTTGGATGGGTTAACTCCATTTGAGAAAAATTTCTATGTGGAGTCCCCAGCAGTGGCAGCAATGTCAGAGAAAGAGGTGGAGCAGTATCGGGAACGGAGGGAAATCACAGTTGAAGGCCGGGATGTTCCAAAACCAGTCATGAATTTTCGCGATGTGGGCTTGCCAGAATATGTCATGCAAGAAATTACAAAAGCTGGCTTTGCTGAACCTACACCCATCCAAGCTCAAGGATGGCCAATGGCTTTGAAGGGCCGTGATGTCATTGGTATTGCTGAAACAGGATCAGGAAAGACACTTGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGCTCCAGGAGATGGCCCAATTGTATTAGTTTTAGCTCCAACTCGTGAACTTGCTGTTCAGATACAACAAGAAGCAGCTAAATTTGGTGCATCATCGAGGATTAAGAATACCTGCATACATGGTGGAGTTCCTAAGGGACCTCAAATTCGTGATCTTCAGAAAGGTGTTGAAATTGTTATTGCTACACCGGGGAGGTTGATTGACATGTTGGAAAGCCATCACACAAACTTGCGAAGGGTCACTTACCTTGTGCTGGATGAGGCTGATCGGATGTTAGATATGGGTTTTGAACCGCAGATTAGAAAAATTGTTTCTCAGATTCGTCCTGATCGTCAAACCCTCTATTGGAGTGCTACATGGCCCAAGGAGGTGGAACAACTTGCTAGGAAGTTCCTTTACAACCCATGTAAAGTGGTTATAGGATCTGCAGATCTAAAAGCTAACCATGCAATTCGTCAGCATGTGGAGATTGTTTCCGAGAATCAGAAATACAACAGATTGGTGAAGTTGCTGGAGGATATTATGGATGGCGGCCGAATTCTTATATTCATGGACACTAAGAAAGGGTGTGACCAGATTACTCGGCAGCTTCGCATGGATGGTTGGCCGGCACTCTCAATTCATGGAGATAAGAGTCAAGCAGAAAGAGATTGGGTACTCTCAGAGTTCAAAGCTGGAAAGAGTCCGATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGGAACAGCCTACACTTTCTTCACAGCCGCCAATGCCAGATTCGCTAAGGAACTCATTACCATACTTGAGGAAGCAGGGCAGAGGGTCGCTCCGGAACTGGCAGCCATGGGTCGTGGTGCACCTCCTCCTCCATCAGGTCATGGGGGCTTCCGAGACCGTGGGAGGGGCCATGGCAGTGGACGCGCCTGGGGCTAA 1521 0.4813 MSRYDGRSGDPGSYRDRRSESGFGGASGYGSGGVRSSSSKRDLDGVESPRKPDLDGLTPFEKNFYVESPAVAAMSEKEVEQYRERREITVEGRDVPKPVMNFRDVGLPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAIIHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRLVKLLEDIMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVAPELAAMGRGAPPPPSGHGGFRDRGRGHGSGRAWG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0189 506 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 478 - -
Vvi9g0189 506 SMART helicmild6 359 440 IPR001650 -
Vvi9g0189 506 SMART ultradead3 119 322 IPR014001 -
Vvi9g0189 506 Pfam DEAD/DEAH box helicase 124 295 IPR011545 GO:0003676|GO:0005524
Vvi9g0189 506 MobiDBLite consensus disorder prediction 1 17 - -
Vvi9g0189 506 FunFam probable ATP-dependent RNA helicase DDX17 62 309 - -
Vvi9g0189 506 MobiDBLite consensus disorder prediction 1 59 - -
Vvi9g0189 506 CDD DEADc_DDX5_DDX17 111 307 - -
Vvi9g0189 506 CDD SF2_C_DEAD 319 449 - -
Vvi9g0189 506 MobiDBLite consensus disorder prediction 477 506 - -
Vvi9g0189 506 Gene3D - 63 306 IPR027417 -
Vvi9g0189 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 131 306 IPR014001 -
Vvi9g0189 506 FunFam ATP-dependent RNA helicase RhlB 310 482 - -
Vvi9g0189 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 479 IPR001650 -
Vvi9g0189 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Vvi9g0189 506 MobiDBLite consensus disorder prediction 40 57 - -
Vvi9g0189 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 456 IPR027417 -
Vvi9g0189 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 100 128 IPR014014 GO:0003724
Vvi9g0189 506 Pfam Helicase conserved C-terminal domain 331 440 IPR001650 -
Vvi9g0189 506 Gene3D - 307 480 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0189 Vvi-Chr9 1903401 1916027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0189 87 460 Eukaryotic Initiation Factors Gene Family AT3G19760 34.574 5.95e-76 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0189 K12823 - vvi:100248020 969.533