Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0163 ATGGAAGAGATGTCTCCTGCAGTTTCTGTGACACTTAGTTTAGGTAGTACTTTATGTGATAATTCGGGAATTGCAACCCATGTGGAAATCACACAGCTCAAACTGGTAACAGATACTGTGAGCTTGTTATCAAGCCCTGCAACTGTACTCTCTTCAGAGTCTGTTTGTAGTGGTGATGGAATTCGAAATGATGTTAAGAGTGAGCCCAATGGGGTAAGTGAATCCGAAGCAGAAGAAGACAGTGGTGGGCGAAGAGTGACTTTGTTGGAGATGGTACCTGAAAAGGGGAATGGTTGGATTGATAGCGGTGACATGATTCAGCATAGCGAGGAAGATGAGATCTTAGCTGTAGTGGACAACACCAGTAGAATTAGTCATGAGGACTTGTTGGCTTTGGTTGCTGGGTCCGAAATAAGCTTGCCAAATTCTATGGAAATTGAAAATGTTGAACATGGTCAAATTGTTGCTAAGGCGATTATATTGCGGGAATCTTCTGAGAAGGTGCCTGCTGGTGAACTCCTTGCCGTGGCAGTGAACCCGGATGCAGTGTTGTCTGGTGGGTCTGATTTGAAGGCATCTGCAGTGGTTTTTCAGTTGTCTACAGACAAGAATCTCAGCAAAGGAAGTGTGCGAAGTGTTTTCGAGCTGGATTGTATACCCCTTTGGGGTTCTGTGTCAATCCAAGGGCAAAGACCAGAAATGGAGGATGCGGTTGCCGCTGTTCCTCGGTTTATGGAAACTCCCATCAAAATGCTTATTGGCAATCGGGCAATCGATGGAATGAGCCAAAGATTCACCCACCTAACCACTCATTTTTTTGGGGTTTATGATGGCCATGGAGGCTCTCAGGTTGCTAACTATTGTCGTGATCGAATCCATTTGGCTTTGGCTGAAGAAATAGGAAGTATCAAGGACGATGTGGAGGATAACAGGCATGGGCTGTGGGAGAATGCCTTCACTAGTTGCTTTCAAAAGGTTGATGATGAGATTGGGGGGGAAGTTAGCAGAGGCATCATTGAAGGAAATGCAGATGTTTCAGATGTTTCTGATGCTAGTTTAGAGCCTATTGCTCCAGAAACTGTTGGGTCTACAGCTGTGGTTGCCTTAATCTGTTCATCCCATATCATCATCGCCAACTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGCAAGGAGCCCATTGCACTATCAATTGATCATAGACCAAACAGAGAAGATGAATATGCAAGGATTGAGGCATCTGGAGGCAAGGTCATACAATGGAATGGCCATCGTGTTTTCGGCGTTCTTGCAATGTCGAGATCTATTGGTGATAGGTATCTGAAACCATGGATCATCCCAGAGCCAGAAGTCATGATGGTGCCTCGGGCTAGAGAAGACGACTGTCTCATCTTAGCCAGTGACGGGTTATGGGATGTCATGACAAACGAGGAAGTATGTGAAGTAGCTCGAAGGCGGATTCTGCTGTGGCACAAAAAGAATGGAGTCGCATCCCTTGTAGAAAGGGGCAAAGGAATCGACCCTGCAGCTCAGGCAGCAGCAGAGTACCTCTCAATGCTTGCTATCCAAAAGGGAAGCAAGGACAACATATCTGTGATTGTGGTGGACTTGAAAGCTCAAAGGAAGTTCAAGAGTAAACCCTCATAA 1647 0.4578 MEEMSPAVSVTLSLGSTLCDNSGIATHVEITQLKLVTDTVSLLSSPATVLSSESVCSGDGIRNDVKSEPNGVSESEAEEDSGGRRVTLLEMVPEKGNGWIDSGDMIQHSEEDEILAVVDNTSRISHEDLLALVAGSEISLPNSMEIENVEHGQIVAKAIILRESSEKVPAGELLAVAVNPDAVLSGGSDLKASAVVFQLSTDKNLSKGSVRSVFELDCIPLWGSVSIQGQRPEMEDAVAAVPRFMETPIKMLIGNRAIDGMSQRFTHLTTHFFGVYDGHGGSQVANYCRDRIHLALAEEIGSIKDDVEDNRHGLWENAFTSCFQKVDDEIGGEVSRGIIEGNADVSDVSDASLEPIAPETVGSTAVVALICSSHIIIANCGDSRAVLCRGKEPIALSIDHRPNREDEYARIEASGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMMVPRAREDDCLILASDGLWDVMTNEEVCEVARRRILLWHKKNGVASLVERGKGIDPAAQAAAEYLSMLAIQKGSKDNISVIVVDLKAQRKFKSKPS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0163 548 SMART PP2C_4 211 535 IPR001932 -
Vvi9g0163 548 ProSiteProfiles PPM-type phosphatase domain profile. 221 537 IPR001932 -
Vvi9g0163 548 FunFam Protein phosphatase 2C 16 209 547 - -
Vvi9g0163 548 ProSitePatterns PPM-type phosphatase domain signature. 272 280 IPR000222 GO:0043169
Vvi9g0163 548 CDD PP2Cc 223 537 IPR001932 -
Vvi9g0163 548 Gene3D - 208 547 IPR036457 -
Vvi9g0163 548 MobiDBLite consensus disorder prediction 69 83 - -
Vvi9g0163 548 SUPERFAMILY PP2C-like 211 538 IPR036457 -
Vvi9g0163 548 Pfam Protein phosphatase 2C 241 530 IPR001932 -
Vvi9g0163 548 PANTHER PROTEIN PHOSPHATASE 167 537 IPR015655 GO:0004722|GO:0006470
Vvi9g0163 548 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0163 Vvi-Chr9 1639139 1641517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0163 1 546 PP2C-type Phosphatase Gene Family AT1G17550 54.069 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0163 K14497 - vvi:100241147 1077.39