Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0161 ATGTCCAGCAGTAAGCTGTTTTCACCCCCTCAATCGAGGGTGAACCTTCACCATCGTCTCCGCATATCAGAGAATTCATCCCATCAAGGTTCTGTATCAGGCTCCAGTAATTATTCAGGGCCCTCCAGCTTGCGATCAAGTAATTCATCCTCTGAGAATTTAGAATTCTCCGGGAGCTCTGGGAGTTCTCTCTCATCACAAACTCAGAATGAGATGGATGCTGAGATGAATAGATTAAAGCTTGAACTAAAGCAATCCATGGATGCGTACAACTCAGCTTCCAAAGAAGCAATGACAGCCACACAGAGACACAGGGCAAGAGATATTCATCAGAGGAAGACAGAGGAAGCACGTAGGTTCCCAGAAGCCAGAATTGGTGAAGAGACAGCTTTAGCTATAGTGGAGTTGGAGAAGCAGAAGAGCAGGAAAGCTATGCAAGCAGCACAAATGGCTCAAAGACTAGCTGAACTGGAAGCGCATAAGAGAAAGAATACTGAACTGAAGGCCAAGCGTGAGGCAGAAGCGAGTGGAAGAGCAATGGATAAACTGTCGCATAATGACATCCGGTATAGGAAATACACCATTGAAGATATTGAAGTTGCAACTGATTACTTCTCAAATTCACTGAAGATTGGTGAAGGTGGATATGGGCCTGTTTATAAAGGCTCACTTGATCATACACCTGTTGCCATTAAGGTTTTGAGACCAGACGTGTCACAGGGGCTGAAACAATTTAAACAAGAGGTTGAGGTACTGAGCTGCATGAGACATCCAAATATGGTTCTCCTTGTAGGTGCCTGCCCTGAGTATGGATGCCTTGTGTATGAATACATGGAAAATGGCAGTTTAGATGACAGGCTTTTCAGAAGAAACAACACTCTCCCACTCCCATGGGCAACCCGTTTCAAGATAGCATCTGAGATCGCCTCTGCCCTTCTTTTCCTTCACCAAACAAAACCAGCTCCCCTAGTTCATCGTGATCTCAAGCCTGCCAACATTCTCCTGGGCAGAAATTATGTGAGCAAGATCAGTGATGTTGGCTTAGCACGGCTGGTTCCAGCTTCTGTGGCTGATAGTGTGACTCAATATCATATGACAGCAGCTGCTGGGACATTTTGTTACATTGATCCTGAGTATCAACAAACAGGAATGCTAGGTGTGAAATCAGACGTGTATTCGTTAGGTGTATTGTTACTACAAATTATTACAGCAAAGCCTCCAATGGGACTGACCCACCAAGTTGCTAGGTCCATTGAGAGAGGAACATTTGCAGAGATGCTTGATCCAACAGTGGAAGATTGGCCAGTTGAGGAGGCTTTATCATTTGCAAAAATGGCTTTGAATTGTTGTGAGCTAAGGAAGAAGGACCGGCCTGATCTTGGTTCAGTGGTTTTGCCAGAGCTGAACCGGCTAAGAGATCTCGGGTTGGATCATGAAGGCAGCTTGCAGGATTAA 1455 0.4522 MSSSKLFSPPQSRVNLHHRLRISENSSHQGSVSGSSNYSGPSSLRSSNSSSENLEFSGSSGSSLSSQTQNEMDAEMNRLKLELKQSMDAYNSASKEAMTATQRHRARDIHQRKTEEARRFPEARIGEETALAIVELEKQKSRKAMQAAQMAQRLAELEAHKRKNTELKAKREAEASGRAMDKLSHNDIRYRKYTIEDIEVATDYFSNSLKIGEGGYGPVYKGSLDHTPVAIKVLRPDVSQGLKQFKQEVEVLSCMRHPNMVLLVGACPEYGCLVYEYMENGSLDDRLFRRNNTLPLPWATRFKIASEIASALLFLHQTKPAPLVHRDLKPANILLGRNYVSKISDVGLARLVPASVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDVYSLGVLLLQIITAKPPMGLTHQVARSIERGTFAEMLDPTVEDWPVEEALSFAKMALNCCELRKKDRPDLGSVVLPELNRLRDLGLDHEGSLQD* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0161 484 PANTHER OS02G0152300 PROTEIN 28 477 - -
Vvi9g0161 484 MobiDBLite consensus disorder prediction 92 118 - -
Vvi9g0161 484 SUPERFAMILY Protein kinase-like (PK-like) 186 464 IPR011009 -
Vvi9g0161 484 ProSiteProfiles Protein kinase domain profile. 205 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0161 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Vvi9g0161 484 Gene3D Phosphorylase Kinase; domain 1 181 277 - -
Vvi9g0161 484 Coils Coil 150 170 - -
Vvi9g0161 484 Gene3D Transferase(Phosphotransferase) domain 1 278 476 - -
Vvi9g0161 484 MobiDBLite consensus disorder prediction 100 118 - -
Vvi9g0161 484 MobiDBLite consensus disorder prediction 25 72 - -
Vvi9g0161 484 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 178 277 - -
Vvi9g0161 484 MobiDBLite consensus disorder prediction 1 72 - -
Vvi9g0161 484 Pfam Protein kinase domain 208 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0161 484 FunFam Os07g0541700 protein 278 369 - -
Vvi9g0161 484 SMART serkin_6 205 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0161 484 Coils Coil 69 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0161 Vvi-Chr9 1624769 1627254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0161 29 479 Receptor kinase-like Gene Family AT5G12000 65.435 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi9g0161 Pkinase 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0161 - - vvi:100254842 851.662