Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0156 ATGCCACATGCCAGGACTGCATCACCGGCAATCATCATTGACGATGATGATTCCGATTCTCCTCCTCCTTCGCCGCTACTTAATCCTCAAGCTTCACCTTCTGTGACGCCACATCCCAGGACTGCATCACCGGCAATCATCATCGATGATGATGATTCCGATTCTCCTCCTCCTCCTCCGCTCCTTAATCCTCAAGCTTCAGGTTCTGTGATGCCACATGCCAGGACTGCATCATCGGCAATCATCATCGATGATGATGATTCCGATTCTCCTCCTCCTCCTCCACTCCTTAATCCTCAAGCTTCAGCTTCTGTGACGCCACATGCCAAGACTTCATCACCGGCAATCATCATCGACGATGATGATTCTGATTCTCCTCCTCCTTCGCCGCTACTTAATCCTCAAGCTTCAGCTTCTGCGAGGCCACATGCCAGGACTGCATCACCGGCAATCATCATCGACGATGATGATTCCGATTCTCCTCCTCCACTCCTTAATCCTCAAGCTTCAGCTTCTGTGACGCCACATGCCAGGACTGCATCATCGGCAATCATCAATGATGATGATGATTCTGATTCTCCTCCTCCTTCGCATCTACTTAATCCTCAAGCTTCAGCTTCTGTGACGCCACATGCCAGGACTGCATCACCGGCAATCATCAATGACGATGATGATTTCGATCCTCCTCCCCCTCCGCTCCTTAATCCTCAAGCTTCATCTTCTGTGGCGCCACGTGCCAGTACTGCATCACCGACAATCATCACCGACGATGATAATCCCGATGGCTCCGAAAATGAGAAAGATGCTATCTGGTACACTACCATGATTTTTGAAGCTCTATCGACCATGAACAATTCGGCGGGATGTAGTATCAGTGAAATCGCTAACTCTATCGAGAAAAGGCATGTGGTGCCTGAGAATTTCAGGGAGTCGCTGAGCTCAAAATTGACAAACCTTGTTTCGATGGAGAAGCTTGAAATGGACCAAAACTGCTTCAAGATAAAGAAGGTTTCGGGTCCGAGTCAGTCAGAGTCGTATAATCAGACATTGGAAGAAGCTGCTGTGGATGCTGCCAGGATAATTGTCGAAGCAAAACACAAGGAAATTCTAGCAGCTGTGGCGGTTGAGTTAGAGAGAGTCGAAAGGATGGCAGAAGAAAATGAGGCAATTCCGAAGCAGCCAGAGGACATCGATGAACAAACTCACGCTACGACTAGTGCCGACCCTTCTACCGCAGCTCCTCCTACGCTCCCTAATCCTTCTCCTCCTCCTCCTGCGCTCCTTAATCCTCAAGCTTCAGCTTCTGTGACGCCACATGCCAGTACTGCATCACCGGCAATCATCATGGACGTTGATGATCCCGATGGCTCCGTAAATGAGAAAGCCTGGTACACTACCATGATTTTTGAAGCTCTATCGACCATGAACAATTCGGCGGGATGCAGTATCAGTGAAATCGCGAATTCTATCGAGAAAAGGCATATGGTGCCTGAGAATTTCAGGGAGTCGTTGAACTCAAAATTGACAGACCTTGTTTCGATGGAGAAGCTTGACATGGACCAAAACTGCTTCAAGATAAAGAAGGTTTTGGGTTCAAGTCAGTCAGAGTCACATAATCAGACATTGGAAGAAGCTGCGGCGGAGGCGGCCAGGTTAATTGCTGAAGCAGAACACAAGGAAATTCTGGCAGCTGAGGCGGTTGAGGAGTTAGAGAGAGTCGAAAGGATGGTAGAAGAAAGTGAGGCAATTCTGAAGATGACAGAGGACCTAATGCGCAATGCTGGAGCTGGCGAAGGAAATCCATGA 1806 0.4867 MPHARTASPAIIIDDDDSDSPPPSPLLNPQASPSVTPHPRTASPAIIIDDDDSDSPPPPPLLNPQASGSVMPHARTASSAIIIDDDDSDSPPPPPLLNPQASASVTPHAKTSSPAIIIDDDDSDSPPPSPLLNPQASASARPHARTASPAIIIDDDDSDSPPPLLNPQASASVTPHARTASSAIINDDDDSDSPPPSHLLNPQASASVTPHARTASPAIINDDDDFDPPPPPLLNPQASSSVAPRASTASPTIITDDDNPDGSENEKDAIWYTTMIFEALSTMNNSAGCSISEIANSIEKRHVVPENFRESLSSKLTNLVSMEKLEMDQNCFKIKKVSGPSQSESYNQTLEEAAVDAARIIVEAKHKEILAAVAVELERVERMAEENEAIPKQPEDIDEQTHATTSADPSTAAPPTLPNPSPPPPALLNPQASASVTPHASTASPAIIMDVDDPDGSVNEKAWYTTMIFEALSTMNNSAGCSISEIANSIEKRHMVPENFRESLNSKLTDLVSMEKLDMDQNCFKIKKVLGSSQSESHNQTLEEAAAEAARLIAEAEHKEILAAEAVEELERVERMVEESEAILKMTEDLMRNAGAGEGNP* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0156 601 MobiDBLite consensus disorder prediction 1 266 - -
Vvi9g0156 601 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 268 336 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi9g0156 601 SUPERFAMILY "Winged helix" DNA-binding domain 268 341 IPR036390 -
Vvi9g0156 601 MobiDBLite consensus disorder prediction 163 188 - -
Vvi9g0156 601 PANTHER SINGLE MYB HISTONE 4 426 597 IPR044597 GO:0003691
Vvi9g0156 601 MobiDBLite consensus disorder prediction 385 402 - -
Vvi9g0156 601 MobiDBLite consensus disorder prediction 385 441 - -
Vvi9g0156 601 SUPERFAMILY "Winged helix" DNA-binding domain 464 528 IPR036390 -
Vvi9g0156 601 SMART h15plus2 247 330 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi9g0156 601 SMART h15plus2 436 522 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi9g0156 601 MobiDBLite consensus disorder prediction 196 214 - -
Vvi9g0156 601 MobiDBLite consensus disorder prediction 413 429 - -
Vvi9g0156 601 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 460 528 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi9g0156 601 Coils Coil 535 590 - -
Vvi9g0156 601 MobiDBLite consensus disorder prediction 238 258 - -
Vvi9g0156 601 Gene3D - 459 545 IPR036388 -
Vvi9g0156 601 Gene3D - 266 354 IPR036388 -
Vvi9g0156 601 Pfam linker histone H1 and H5 family 464 518 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi9g0156 601 Pfam linker histone H1 and H5 family 272 326 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0156 464 598 Single Myb Histone (SMH) Gene Family AT1G72740 35.065 9.78e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0156 K09422 - vvi:104880293 577.785