Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0152 ATGGAACCTCGAGTTGGCAACAAGTTCCGGCTTGGTCGTAAGATCGGCAGTGGATCATTCGGAGAGATCTATCTCGGCACTAATATTCAGACAAATGAGGAGGTTGCTATTAAGCTTGAAAATGTCAAGACAAAGCATCCCCAATTGTTGTATGAGTCAAAATTGTATAAGATACTACAAGGAGGAACGGGAATTCCAAACGTGAAATGGTTTGGTGTTGAAGGAGACTACAATGTTCTTGTGATGGATTTGCTAGGACCTAGTCTTGAAGATTTATTCAACTTTTGCAGTAGGAAGCTATCTCTGAAGACAGTTCTCATGCTTGCAGATCAGATGATCAATCGAGTTGAATTTGTTCATTCAAAATCATTTCTTCATCGAGATATTAAGCCAGACAACTTTCTTATGGGTTTAGGAAGGCGTGCTAATCAGGTCTATGTTATTGACTTTGGTCTGGCTAAGAAGTACAGAGACTCTTCAACCCATCAACACATTCCTTATAGAGAAAATAAGAATTTGACTGGAACTGCAAGATATGCAAGCATGAACACTCACCTTGGCATTGAACAAAGTCGCAGGGATGATTTAGAATCTCTTGGATATGTTCTTATGTATTTCTTAAGAGGAAGTCTTCCTTGGCAGGGATTGAAAGCTGGAACAAAGAAACAAAAGTATGAAAAGATCAGTGAAAAAAAAGTTTCAACATCAATTGAGGCCTTGTGTCGTGGTTATCCTACAGAATTTGCATCATATTTCCATTACTGCCGCTCACTTCGATTTGATGATAAACCAGATTATGCATATCTCAAAAGAATCTTCCGTGACCTTTTTATTCGTGAAGGATTTCAGTTTGATTATGTGTTTGATTGGACAATTCTGAAGTATCAGCAATCACAGATTTCTGGACCACCTAGCCGCGCTCTTGGCCCTGGGGCTGGACCAAGCCATGGGATCCCTCCTGCTGTTGCCAACATGGATAGACAATCAGGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCAGGAGGACCACTGTACCAGCTCTAAATCTTGGAAGCTTGAAACAAAAAAGTCCAGTTGCAAATGATTCAACAATGGCAAAAGATAGTCTGTCAGCTAATGTGAGGGCAAGTGGATCATCAAGGCGAGGTGCAGTTTCTAGCAGTCGTGATGCAGTTATTGTTGGAGGTGAATCTGACCCGTCTCGATCTCGTGCTGATGCAAGCCCAGGAGCACTCCGCAAAATTTCTAGTGGACAAAGAGGTTCACCTGTTCATTCATCAGAGCACAAACGTATATCTTCTGGCAGAAACACCTCCTCGAACATAAAGAACTTCGAATCCACCCTTAAGGGTATCGAGTCCCTGCACTTCAATAATGAAGAGAGAGTGCAGTATTAG 1416 0.4223 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQISGPPSRALGPGAGPSHGIPPAVANMDRQSGGEDGRPSGWSSADPSRRRTTVPALNLGSLKQKSPVANDSTMAKDSLSANVRASGSSRRGAVSSSRDAVIVGGESDPSRSRADASPGALRKISSGQRGSPVHSSEHKRISSGRNTSSNIKNFESTLKGIESLHFNNEERVQY* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0152 471 FunFam Casein kinase I isoform delta-like 1 308 - -
Vvi9g0152 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi9g0152 471 CDD STKc_CK1_delta_epsilon 8 282 - -
Vvi9g0152 471 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0152 471 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi9g0152 471 PANTHER CASEIN KINASE-RELATED 9 394 - -
Vvi9g0152 471 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vvi9g0152 471 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0152 471 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Vvi9g0152 471 MobiDBLite consensus disorder prediction 303 448 - -
Vvi9g0152 471 FunFam Putative Casein kinase I 1 85 - -
Vvi9g0152 471 MobiDBLite consensus disorder prediction 342 392 - -
Vvi9g0152 471 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0152 Vvi-Chr9 1560604 1566600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0152 7 223 EF-hand Containing Proteins AT2G17890 26.222 4.12e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vvi9g0152 Pkinase 3.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0152 K02218 - vvi:100244694 921.383