Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0146 ATGGGATTGCCATTTTCCTTGCCCTCATCTATCCCAACACAAAGCCTGAGAACAAGACTGTTTGGTTCAACAGAAAATGTAGATACAGTTATAGTAAGATCCATCAGCTTCAACTCCAATGACGGGGAGACAATGCTGAGAACTGTTAGTTTCAAGAAAAGGGATTCTGATAACATCACCATATCTGATGGCTCTGATGAGGTGGTTATTGAAGAATCGATACACTTCAGGAAACCAGAGTTCAAAAAGCTAAGGCTTGAAACTACTGTTTCATTCAAGAGTATAGTGCTGGATGGAGAGAATTTGGATTCAAGGGAAAAAGGTGACGAATTGACTAAGAAAACAAACCCTGCAGAGACTGTACCTGACCCAGCCGTCTTGTTCTCTCCAAGGCCTGTTAGTGAGCTTGATGCTGCCGCAGTTAAGCTGCAGAAAGTTTACAAGAGTTACCGAACAAGACGGAACCTTGCAGACTGCGCTGTAGTTGTTGAAGAGCTCTGGTGGAAGGCATTGGACTTTGCAACACTGAAGAGGAGCTCTGTGTCGTTCTTCAACATTGAGAAACCAGAAACTGCAGTTTCACGTTGGGCACGGGCCAGTACGAGGGCAGCCAAGGTTGGGAAGGGCTTGTCCAAGGATGAGAAGGCTAAGAAACTAGCACTGAGACATTGGCTTGAAGCAATTGATCCACGCCATCGCTATGGACACAATCTACACTTGTATTATGATGTCTGGTTCCATAGTGAGAGCTCCCAACCTTTCTTCTACTGGTTGGATGTTGGAGATGGCAAGGAATTAAACCTTGAGAAGTGCTCGAGAGCTGTTCTACAGCGACAATGCATCAAGTACCTTGCTCCGAAAGAGAGGGAAACATATGAAGTGATTGTAGACGATGGGAAGCTTGTCTATAGGCGCAGTGGGGAGCTTGTGAATACCGTTGAGGGTTCCAAGTGGATTTTTGTCCTGAGCACCTCAAGGAATATGTATGTAGCAGAAAAGAAGAAAGGCCGGTTTCAGCACTCGAGTTTTCTCGCTGGAGGAGCTACCACTGCAGCTGGAAGACTGGTTGCCCATAATGGAGTTCTTGAGGCTATATGGCCTTACAGTGGCCATTATCACCCAACAGAGGAGAACTTCATGGAGTTCATCAGCTTCCTAGAGGAGCACCATGTAGACTTGACCAATGTGAAGAGATGTGCAGTAGATGATGACAACCCAACGCTCAAAATTGCAGACAGTGAGCTGAAGTCATCAGACTCGCCAAGGTTTCCCTCAGGAAGCATCACCGTCTCTGAAGCAGCTGATGCAGATGGGGTCATCACCCAGGAGGCCAAACCAACAGCAATTCATCAAGAGGACAACGTGGGCAGAATTGGAACCGACATAGAACCGGCGTTTGGCCTAGGCAAACGATTGTCGTGCCAATGGACTACTGGGGCTGGTCCGCGAATCAGGGTCTTAAGGGACTACCCTGCAGAGCTCAAAATCAGAGCACTGGAGCAAGTCAACCTATCCCCCAGGATCAATCCAGGAGCCTTTGGCAGCAGCAGCATTCCAGTCCTGCCAATCCCCTCACCAAGGCCAAGCCCCAAGATCCACCTATCCCCCAGACTTTCCTACATGGGACTCCCTAGCCCAAGGCATTTTCTGATAACATTTTTCTCTATTCTCGTGTTTCTTCACTTCAAAAAAACAGATTTTTGTCTCATGGGTGGTTCAGGGAACTGGCTAAAATCGCTGATTGGGCACAAAAATGCCCAGATCAAAGACCATAAGGAGGCTGGTGGTAATGGGAGGAGAAAATGGAGGCTGTGGAGGAGCTCTTCGGGGGGTTTGGGTTTGAAAGGAAAGAACGTGGCGGCATCAGAGGCGTCCGATTCTTCAGTGGTGGCTGGTAATGGGTTCTCTGCTGCTGTGGCTGCCGTTGTTCGAGCTCCGCCCAAGGATTTCATGGTGGTTCGCCAAGAATGGGCTGCGATTCGCATCCAGACCGCTTTTCGAGGCCTTCTGGCAAGAAGGGCCCTGAGGGCCTTGAAAGCTCTGGTGAGGCTTCAGGCCATAGTCCGTGGCCGGCAGGTCAGAAAGCAGGCGGCTGTGACACTCAGGTGTATGCAGGCACTTGTTCGGGTTCAGGCCCGAGTCAGGGCTCAGTGTGTGAGCATGGCCTCAGAAGGGCAGGCACAGCAGAAAGTACCTGATCATCTTCAAAACCTGCCTGATCCCATTAAGCAGGCAGAGGTATTATAA 2247 0.4927 MGLPFSLPSSIPTQSLRTRLFGSTENVDTVIVRSISFNSNDGETMLRTVSFKKRDSDNITISDGSDEVVIEESIHFRKPEFKKLRLETTVSFKSIVLDGENLDSREKGDELTKKTNPAETVPDPAVLFSPRPVSELDAAAVKLQKVYKSYRTRRNLADCAVVVEELWWKALDFATLKRSSVSFFNIEKPETAVSRWARASTRAAKVGKGLSKDEKAKKLALRHWLEAIDPRHRYGHNLHLYYDVWFHSESSQPFFYWLDVGDGKELNLEKCSRAVLQRQCIKYLAPKERETYEVIVDDGKLVYRRSGELVNTVEGSKWIFVLSTSRNMYVAEKKKGRFQHSSFLAGGATTAAGRLVAHNGVLEAIWPYSGHYHPTEENFMEFISFLEEHHVDLTNVKRCAVDDDNPTLKIADSELKSSDSPRFPSGSITVSEAADADGVITQEAKPTAIHQEDNVGRIGTDIEPAFGLGKRLSCQWTTGAGPRIRVLRDYPAELKIRALEQVNLSPRINPGAFGSSSIPVLPIPSPRPSPKIHLSPRLSYMGLPSPRHFLITFFSILVFLHFKKTDFCLMGGSGNWLKSLIGHKNAQIKDHKEAGGNGRRKWRLWRSSSGGLGLKGKNVAASEASDSSVVAGNGFSAAVAAVVRAPPKDFMVVRQEWAAIRIQTAFRGLLARRALRALKALVRLQAIVRGRQVRKQAAVTLRCMQALVRVQARVRAQCVSMASEGQAQQKVPDHLQNLPDPIKQAEVL* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0146 748 Pfam IQ calmodulin-binding motif 657 676 IPR000048 GO:0005515
Vvi9g0146 748 Pfam IQ calmodulin-binding motif 138 155 IPR000048 GO:0005515
Vvi9g0146 748 ProSiteProfiles IQ motif profile. 655 683 IPR000048 GO:0005515
Vvi9g0146 748 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 44 532 IPR044159 -
Vvi9g0146 748 SMART iq_5 654 676 IPR000048 GO:0005515
Vvi9g0146 748 SMART iq_5 677 698 IPR000048 GO:0005515
Vvi9g0146 748 SMART iq_5 135 157 IPR000048 GO:0005515
Vvi9g0146 748 ProSiteProfiles IQ motif profile. 679 706 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0146 Vvi-Chr9 1518754 1523754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0146 570 746 IQD Protein Family AT1G72670 60.215 8.69e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0146 - - vvi:100263563 1072