Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0138 ATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGATGTGGACGAATTTTATCAGCAGTGTGATCCCGAGAAGGAGAATCTGTGCCTTTATGGATTTCCAAATGAACTATGGGAAGTCAATTTACCTGCAGAAGAGGTGCCTCCAGAACTCCCAGAGCCTGCACTAGGGATCAACTTTGCAAGAGATGGAATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTGCTTGCTGTTGCCTTCTATTTTGGTGCCAGATTTGGATTTGATAAAGCTGACAGGAAGCGGCTCTTTAATATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACTGGTACTGCAAAGAAGCAAGTAAAGGAGAAATCATCAGTGTCCAATCACAGCAGCAACAAATCCAAATCAAACTCTAAAGTGGTGCCACAGCAGCAACAGCCGCAGCAGCGGGGATCTGAATCTCAGGGAAAGTATTCTAAGACACCACAGAAGGATGAAGATGAGGGCTTGGAAGAGGAAGAGGAAGACGAGCACGGCGAGACATTGTGTGGAGCATGTGGCGAGAACTACGCATCAGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCAGCTAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCATGCAGCAACAAGAGATCTCGCCCCTGA 786 0.4669 MDGGANYNPRTVEEVFRDFKGRRAGMIKALTTDVDEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKVVPQQQQPQQRGSESQGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0138 261 MobiDBLite consensus disorder prediction 145 183 - -
Vvi9g0138 261 Pfam PHD-finger 208 257 IPR019787 -
Vvi9g0138 261 CDD PHD_AL_plant 207 257 IPR044104 -
Vvi9g0138 261 PANTHER CPG BINDING PROTEIN 8 260 IPR045104 GO:0006355|GO:0042393
Vvi9g0138 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Vvi9g0138 261 MobiDBLite consensus disorder prediction 145 201 - -
Vvi9g0138 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Vvi9g0138 261 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Vvi9g0138 261 FunFam PHD finger alfin-like protein 200 256 - -
Vvi9g0138 261 SUPERFAMILY FYVE/PHD zinc finger 197 259 IPR011011 -
Vvi9g0138 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Vvi9g0138 261 SMART PHD_3 207 255 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0138 Vvi-Chr9 1392390 1397650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0138 1 260 Alfin-like Transcription Factor Family AT3G42790 75.573 6.44e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vvi9g0138 Alfin 7.8e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0138 - - vvi:100263503 473.396