Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0137 ATGCAACACTTGTGTAAGAATGATTTTCATGTAAATTCAGCTCGTCCAACGTCACCATGTGATGCCAGTAGCCCACATTGGTGGACTTCAAGTGAAACAAATACTCAACAATCATCTCTGCCCAAATTTTCACGCCTCAAGATAGGAACTCAAACTATAGATTATCATAGTACCAAGGAATTGGGCTCCCAAGTTCGAGATCAGGATTCACCCTCAACTCGGTCAACTGGCCAGTCTTACCCTGGAGTGCTTCACTGGGGAGGAAACAACACTCATGGGCAAAGCATATTTTCAGCACACTTAGGATACAAGGAAACTCATGGGAAGCCCATGGTATCAATCGGAAATCAGGATTATCTCTTCACTCCCTCACAAGTTGATTGCAACCAATTGACTGCTCGCATTCCAATCACTGCCACCGAGATATACCATTGCGACTTACTAGCACCTGCTTATGGTACAAAGGCTATGATTCATCATCCTCAAATGATGGGAATGGCCCCTTCTCGAGTGCCATTGCCTGTACTAAATCCACAAGAAGAGGTTATTTTCATCAATCCAAAGCAGTATAATGGAATTATGAGGCGGAGGAAGCATCGCGCCAAGCTTGAAGCTCAAACCAACCCTGTCAAAGCTAGAAAGCCTTATCTCCATGAGTCTAGGCATCTCCATGCCTTGAAGAGGCCTCGTGGAGCTGGTGGACGCTTCCTCAACATGTCCAAGCTCCAAGAACCCAAGCCTTCTTCTCCCTCAACAGATGCTCTGATTGCAGGCTCAGCTCAGCCACCTTTCAATGGAAATACTGCATCAGAGTCTGAAGTTCATCAGCCAGAAAACAACAGAGAAGGGGCTTCCACCACCTCCTGCTCTGATGTCACTAGCGGCTCAAACAGTGATGACGTCTTTCTGCAGCCAGAATTCAGGTTCTCCACCTACCCTCCTCACATTGGCGGATCCATGAAAAGGAATGATTCTGGGAGCAATAACTTAGGTGGGTCTGGCCTCGGGTGA 1011 0.4698 MQHLCKNDFHVNSARPTSPCDASSPHWWTSSETNTQQSSLPKFSRLKIGTQTIDYHSTKELGSQVRDQDSPSTRSTGQSYPGVLHWGGNNTHGQSIFSAHLGYKETHGKPMVSIGNQDYLFTPSQVDCNQLTARIPITATEIYHCDLLAPAYGTKAMIHHPQMMGMAPSRVPLPVLNPQEEVIFINPKQYNGIMRRRKHRAKLEAQTNPVKARKPYLHESRHLHALKRPRGAGGRFLNMSKLQEPKPSSPSTDALIAGSAQPPFNGNTASESEVHQPENNREGASTTSCSDVTSGSNSDDVFLQPEFRFSTYPPHIGGSMKRNDSGSNNLGGSGLG* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0137 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 236 IPR001289 GO:0003700|GO:0006355
Vvi9g0137 336 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Vvi9g0137 336 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Vvi9g0137 336 MobiDBLite consensus disorder prediction 11 43 - -
Vvi9g0137 336 MobiDBLite consensus disorder prediction 242 304 - -
Vvi9g0137 336 MobiDBLite consensus disorder prediction 321 336 - -
Vvi9g0137 336 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Vvi9g0137 336 MobiDBLite consensus disorder prediction 59 79 - -
Vvi9g0137 336 MobiDBLite consensus disorder prediction 1 43 - -
Vvi9g0137 336 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
Vvi9g0137 336 MobiDBLite consensus disorder prediction 202 336 - -
Vvi9g0137 336 Gene3D - 179 239 - -
Vvi9g0137 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 300 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0137 Vvi-Chr9 1385899 1390689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0137 8 313 CCAAT-HAP2 Transcription Factor Family AT3G14020 41.615 9.20e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi9g0137 CBFB_NFYA 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0137 K08064 - vvi:100249800 677.167