Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0128 ATGATGTTGCTCAACTACCATGACCTTCTGGTGGCCGCAATTGTCGGCTCTGGCCTTGCAGTCTACATTCTCTTCATGATCGGCTGGTGTGTTTACCAGCAGCTATCTCATCAGGAGATATCTCAACAGCGGTTAAACACTTCTCTTGGGGAGAAGAGCTTTGCTTCCAGAAGCCTAAACCGGTACCTGGTTTCCTCATTTAAGTACAAGAAAGGGATCAACACCCCCGAAGATGAAGCTTCTGATGCAGACTGTGTAATATGCTTGTTAGGGTTTGAAGATGGTGAAGATCTGCAGCAACTCCCACGTTGTAACCATTCCTTCCATGCACCGTGTATTAATATGTGGCTTTATTCTCATTCTGACTGTCCACTTTGCCGTGAATCTCTAGAAGAAGTGGCTTCAGAAGGGAATTACCCATAA 423 0.4563 MMLLNYHDLLVAAIVGSGLAVYILFMIGWCVYQQLSHQEISQQRLNTSLGEKSFASRSLNRYLVSSFKYKKGINTPEDEASDADCVICLLGFEDGEDLQQLPRCNHSFHAPCINMWLYSHSDCPLCRESLEEVASEGNYP* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0128 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 134 IPR013083 -
Vvi9g0128 140 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 129 IPR044675 -
Vvi9g0128 140 CDD RING-H2_EL5-like 84 127 - -
Vvi9g0128 140 Pfam Ring finger domain 84 127 IPR001841 -
Vvi9g0128 140 FunFam RING-H2 finger protein ATL52 46 132 - -
Vvi9g0128 140 SUPERFAMILY RING/U-box 74 133 - -
Vvi9g0128 140 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Vvi9g0128 140 SMART ring_2 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0128 Vvi-Chr9 1282963 1283385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0128 9 127 C3H Transcription Factor Family AT5G17600 35.878 3.67e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0128 - - minc:123200220 128.257