Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0126 ATGGAAACAGTGGTTGGAGTTGAGGGGAATGATGAAGCCAAGTTTGAGGACTGTGTGGTTGAGAAAAGTGGCCCTGAACCAACTCAGTCGAAGCAGATTGCTGACCCGGTTGTGTATAAGCTCGTTCGGGTTGATGGTGATGGGAGATTAGTGCCTGCGACAGATGATGAAGTTATGGAGGTTGAGGACTTGCTCGAAGAGTTTAAAATTGAAATGCCTTTTGTTGCCGACACTGGGCAGACTGTAGAATGCACTTCCAAAGAAGAGTTCCCCTCTGGGAATCCTCATTTAGAATGTTCAGAAGGTATGTTGCAATCAGTGAACACAGAAATAGATGCAGAAAAATTAAGTGCACGGCTTGAGCAGAGACACCGAGCATGCTTATCTGCATCACTTTCTTCCTACTCAGAAAAAAGTACACAGTATATCGGGGAGATGTTGCAAAAGGTTAACCAGGAAGAGAGGCTCCGCTTAGCCTATGGATCTCCTGATCATTCTTCTGCTTATATGAATGTAGACAGCCAGTATTCTGATGAGCATGATAAATTGCCTGCTATTGACAAGAAGCTCCAATCTAAAATTCCCTTGCAGGAAATTGTTCCTTCTTCAGTGCTGAGTTCAAATGACACTCACATTGATCAATCTGGCAGTGTCGGGGAATGCTCAAACCCTCCAGGTGGACCAATGGACAGTGGATCATCAGCTTCGGCTGTCTGTACTAGTCTGAAGCCTGATTTTACTAAGCTGAAAGGGGAAATATGCTTGGACAATCTATCAATTAGAGAACTACATGAAACTTTTAAAGCAACATTTGGGCGAGAAACATCTGTCAAGGACAAGCAGTGGCTTAAGAGGAGAATTGCCATGGGATTGACTAATTCTTGTGATGTCTCAACCACAACATTCATATTCAAAGACAACAAATCGATGAAGAAAGTTAAAGAAGAATGCTGTAAGAGTGTGGATGGTACTTTAATCGAAGATACAGTAGTTGGGGCAAAAAATGATAACTGCAGAGATTCACCTACTAGCCGCAATAACCGAGGGGAAGCTCATCAGATTCTTTCTGGTAAGAGATTGCGAAACTCTAGTGTAGAATATGATTGTGGAAGTGATGATCTTCACACGGAACAGATTGCTGGCAAAAGAATTCGAAAGCCTACAAAGCGATATATTGAAGAACTTTCAGAAGCTGATTCCAGAGAATATGGTGGAAGGTTAACATCATCAGTTAAAAATTCTGTACATGGTCAGTCATCTCCAAAATCTCAAGCCAGACCTGTTCGAAATGTCTGTTCTGAGGGGAAAACGGTTGTCACCAGGCTTGATTCTCTTGGAGGATCTGGGGTTCAGGTTCCTTATGTTTTTAGGGTCCGAAGAAGCCGCCCGAGGAAAAACTTTATGGCTCTTATGAAATTCAACACCAATAGCATGGGCATGGCAGCTAAGCTAGTCAAGAAGGCCCTTGGTGTGCGTAGTTCTCGAACGGATAATGAAGGTGGGAACAAAGTTTTGCAATCCAGACCTGCTCCTAAGCGGCTTCAGCTGCCGCTTATTGGTGAACCAGTAAAACATGAGCAATGCTCAGTAGCAGACACAATTGAACTGGAGCAAAGGGTGGAGCTGAAACATGTGGATTCATCTGGAGATACTTCAGATGATAACATTGCAACTGTGCCCACGGCAAAAGGTGGAATGAGAAGGAAGCACCATCGAGCTTGGACTCTCAGTGAGGTTATGAAGCTAGTTGATGGTGTATCTAGGTATGGAGCTGGAAGGTGGTCTGAGATCAAGCGGCTTGCCTTTGCGTCCTATTCATACCGAACCTCAGTTGACCTCAAGGACAAATGGAGGAACCTACTGAGAGCTAGCTTCGCTTTATCGCCTGCAGAAAAAGGGATGAGTTCCCGAAAGCATGGCTCAATGCCCATCCCGGCAGCGATCCTGTTAAAAGTGAGAGAGCTTGCTGAAATGCACGCCCAGGTTGCGCCCAATCTGGGCACAAGCAAGCCATCTGGTTGTGGTGGGAGGACTGTACATGAAACAAGAGCAGGGTTCTTGTAA 2064 0.4482 METVVGVEGNDEAKFEDCVVEKSGPEPTQSKQIADPVVYKLVRVDGDGRLVPATDDEVMEVEDLLEEFKIEMPFVADTGQTVECTSKEEFPSGNPHLECSEGMLQSVNTEIDAEKLSARLEQRHRACLSASLSSYSEKSTQYIGEMLQKVNQEERLRLAYGSPDHSSAYMNVDSQYSDEHDKLPAIDKKLQSKIPLQEIVPSSVLSSNDTHIDQSGSVGECSNPPGGPMDSGSSASAVCTSLKPDFTKLKGEICLDNLSIRELHETFKATFGRETSVKDKQWLKRRIAMGLTNSCDVSTTTFIFKDNKSMKKVKEECCKSVDGTLIEDTVVGAKNDNCRDSPTSRNNRGEAHQILSGKRLRNSSVEYDCGSDDLHTEQIAGKRIRKPTKRYIEELSEADSREYGGRLTSSVKNSVHGQSSPKSQARPVRNVCSEGKTVVTRLDSLGGSGVQVPYVFRVRRSRPRKNFMALMKFNTNSMGMAAKLVKKALGVRSSRTDNEGGNKVLQSRPAPKRLQLPLIGEPVKHEQCSVADTIELEQRVELKHVDSSGDTSDDNIATVPTAKGGMRRKHHRAWTLSEVMKLVDGVSRYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLRASFALSPAEKGMSSRKHGSMPIPAAILLKVRELAEMHAQVAPNLGTSKPSGCGGRTVHETRAGFL* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0126 687 Gene3D - 561 666 - -
Vvi9g0126 687 MobiDBLite consensus disorder prediction 403 429 - -
Vvi9g0126 687 ProSiteProfiles Myb-like domain profile. 574 621 IPR001005 -
Vvi9g0126 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 566 625 IPR017930 -
Vvi9g0126 687 CDD SANT_TRF 572 622 - -
Vvi9g0126 687 Pfam Myb-like DNA-binding domain 573 621 IPR001005 -
Vvi9g0126 687 MobiDBLite consensus disorder prediction 406 427 - -
Vvi9g0126 687 MobiDBLite consensus disorder prediction 545 564 - -
Vvi9g0126 687 MobiDBLite consensus disorder prediction 206 235 - -
Vvi9g0126 687 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 686 - -
Vvi9g0126 687 SUPERFAMILY Homeodomain-like 572 631 IPR009057 -
Vvi9g0126 687 SMART sant 570 623 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0126 Vvi-Chr9 1250269 1263734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0126 574 620 Single Myb Histone (SMH) Gene Family AT1G72740 44.898 2.90e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi9g0126 Myb_DNA-binding 8.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0126 - - vri:117921679 1344.72