Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0119 ATGGGGAGGAGCCCATCTTTTGCCGATGTGGGACTCATTAGAGGAGCATGGTCAATGCAAGAAGATGAAGTTCTCATCAACTACATCAGAGTCCATGGAGAAGGCAACTGGAAAAGTCTTGCTCAAAAATCAGGTTTGAAGAGATGTGGAAAGAGTTGCAGGCTTAGATGGTTGAATTACTTGAGGCCTGGGCTAAAGAGAGGTAGCTTTTCTCCTGATGAAGAGGAGCTCATCATCAAACTTCATCGTCTTCTCGGTAACAGGTGGGCTTTGATTGCAGGAAGACTTCCAGGGAGAACCGACAACGAAATTAAGAACTATTGGAACACCACCCTTTGTAAGAGGCTGCGAGGAGATCAGAAAATAGAGAAGAAGCCGGTGGATAATTCTGCAACATTGGACAGTCCTCAACCCATTCGAACTAAGGCTTTTCGTTGCCAAAGAGTTATCATCTCAACTCATAAAGAAGAAAGCCATTTGATGAATAAAGATTCAGACTTCATCTCTGAAACAGGCCATCTCCCAAGTACTTCTACTTCAACCTTGCTCCATGACAGTTCTATAAACTTCCTGATAGACTCTTATGACGTACCAGCAGCTTTGGATCCATATTTCCTGCAGATTCCTAGCTATAAGATGCAAGAAAATGCTATTTCTTCTTCTTTTTCTGATTGTTATTTGTCAGAAGATGAACTTTTGGTTCAAAACAGGATCAGTTATGAACCTCCTCAGCTCACTTGGGCCTTGGAGCTGAAGAAGGTGGCTTCATTCTTGGATTTGGAAGATGACTGA 792 0.4268 MGRSPSFADVGLIRGAWSMQEDEVLINYIRVHGEGNWKSLAQKSGLKRCGKSCRLRWLNYLRPGLKRGSFSPDEEELIIKLHRLLGNRWALIAGRLPGRTDNEIKNYWNTTLCKRLRGDQKIEKKPVDNSATLDSPQPIRTKAFRCQRVIISTHKEESHLMNKDSDFISETGHLPSTSTSTLLHDSSINFLIDSYDVPAALDPYFLQIPSYKMQENAISSSFSDCYLSEDELLVQNRISYEPPQLTWALELKKVASFLDLEDD* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0119 263 CDD SANT 69 112 IPR001005 -
Vvi9g0119 263 FunFam MYB transcription factor 68 127 - -
Vvi9g0119 263 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi9g0119 263 Gene3D - 68 135 - -
Vvi9g0119 263 ProSiteProfiles Myb-like domain profile. 14 61 IPR001005 -
Vvi9g0119 263 CDD SANT 16 61 IPR001005 -
Vvi9g0119 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi9g0119 263 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi9g0119 263 Gene3D - 13 66 - -
Vvi9g0119 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi9g0119 263 FunFam MYB-related transcription factor 13 66 - -
Vvi9g0119 263 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 170 - -
Vvi9g0119 263 SMART sant 66 114 IPR001005 -
Vvi9g0119 263 SMART sant 13 63 IPR001005 -
Vvi9g0119 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi9g0119 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0119 Vvi-Chr9 1186241 1187762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0119 1 152 MYB Transcription Factor Family AT4G38620 54.545 1.88e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi9g0119 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0119 K09422 - vvi:100244575 523.472