Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0118 ATGGGTAGGAGCCCCTGTTGTGCTAAGGAAGGTTTGAATAGGGGAGCATGGACTGCTACTGAAGATAAGATCCTCACAGAATACATTAAAGTACATGGGGAAGGGAAGTGGAGGAACCTTCCCAAGAAAGCAGGTCTCAAAAGATGTGGGAAGAGTTGCAGGCTGAGGTGGTTGAATTATCTGAGACCTGATATCAAGAGAGGGAACATAACCCATGATGAAGAAGAGCTCATTATCAGGCTTCACAAGCTCCTGGGGAACAGATGGTCTCTCATTGCTGGAAGGCTTCCGGGCCGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGGAAGAAAATAAGCTCCACCCCCAATCATAGGCCAAGAATCCAATCTGAAGAGAGGCCGAATTCCACCTCGATTAGCCCGCGACCTTCGCTGAATAATGGACCGCCGCCCGTGCTCCATGCTAAGCCATCAAGGTGTACTAAAGTATTCATTGCCACTGAGCCACCAAAAGTTGATCAAGTAATTGAAACTAGACCAGTGTCATTAGGACCCTCTACGGTTCAAGGTTTGGCCATGGCGCATGATCAGAAGGCAGAGGAGCCGGATTCTTCACCGGCGATCGGTTCTGGGAATGAGAATGATAGCAATCCTTCTGATTTCATGATAGACTTTGAGATGGATGCAAACTTCCTATCTGAGTTCCTCAACTCTGATTTCTCACAATTATGTGACTTCCATGATGGGGTTGAAGCAGATAGTAACACTAATAACACCAGTAGCACAAGTCAGCACTCATCTCCCAATGCCACGGAAGCCCCACTGCTGATGAATGAAGAAGAAACACTGCAAAACTCTAATCTATTTTCCTTGGATTCTTTTCTTGATTGCGAAATGGACTGGTTCTGCTGA 906 0.4603 MGRSPCCAKEGLNRGAWTATEDKILTEYIKVHGEGKWRNLPKKAGLKRCGKSCRLRWLNYLRPDIKRGNITHDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKISSTPNHRPRIQSEERPNSTSISPRPSLNNGPPPVLHAKPSRCTKVFIATEPPKVDQVIETRPVSLGPSTVQGLAMAHDQKAEEPDSSPAIGSGNENDSNPSDFMIDFEMDANFLSEFLNSDFSQLCDFHDGVEADSNTNNTSSTSQHSSPNATEAPLLMNEEETLQNSNLFSLDSFLDCEMDWFC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0118 301 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vvi9g0118 301 MobiDBLite consensus disorder prediction 175 219 - -
Vvi9g0118 301 Gene3D - 69 138 - -
Vvi9g0118 301 CDD SANT 16 61 IPR001005 -
Vvi9g0118 301 Gene3D - 14 66 - -
Vvi9g0118 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi9g0118 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 242 - -
Vvi9g0118 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi9g0118 301 MobiDBLite consensus disorder prediction 112 151 - -
Vvi9g0118 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi9g0118 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi9g0118 301 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vvi9g0118 301 CDD SANT 71 112 IPR001005 -
Vvi9g0118 301 FunFam MYB-related transcription factor 13 66 - -
Vvi9g0118 301 FunFam Transcription factor TT2 70 139 - -
Vvi9g0118 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi9g0118 301 SMART sant 66 114 IPR001005 -
Vvi9g0118 301 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0118 Vvi-Chr9 1174839 1176015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0118 1 118 MYB Transcription Factor Family AT2G16720 75.424 1.47e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi9g0118 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0118 K09422 - vvi:100244605 614.764