Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0116 ATGGCTGAGAAGGAAGTGAAGTCAATTGGGTCTGTGAAAGATGTGAGGAAGGAAATGAATAGGGGAGCATGGACAGCAGAAGAAGATAGAAAACTGGCTGAGGTTATTGAAGTCCATGGTGCCAAGAGGTGGAAGATGATTGCAACCACAGCAGGTTTGAATCGGTGTGGGAAGAGTTGCAGGCTTCGATGGATGAATTATCTAAGACCCAACATCAAGAGAGGCAACATATCAGACCAGGAAGAGGACTTGATACTCAGGCTTCACAAACTCTTGGGAAACAGGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAAAGTGGAGGTTCAACAAGAGGCTGCTCCAAACTTCAGAGAACAAGAGTGGTAGAGGAGGTGAATGTTGTAGAGGTGAAACGAGAGGACACCTCTAATGGAGGTGATCAATGCTCGAAAATGAGCTTCAATGTCGACGAATTCTTTGATTTCTCCGAGGAGGGTCCTCTGAACTTAGAGTGGGTGAGCCAATTCCTTGAACTGGATGAGGGCTTATGCCATCCTTCATAA 612 0.4493 MAEKEVKSIGSVKDVRKEMNRGAWTAEEDRKLAEVIEVHGAKRWKMIATTAGLNRCGKSCRLRWMNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQEKQSGGSTRGCSKLQRTRVVEEVNVVEVKREDTSNGGDQCSKMSFNVDEFFDFSEEGPLNLEWVSQFLELDEGLCHPS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0116 203 CDD SANT 78 119 IPR001005 -
Vvi9g0116 203 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Vvi9g0116 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Vvi9g0116 203 Gene3D - 21 73 - -
Vvi9g0116 203 CDD SANT 23 68 IPR001005 -
Vvi9g0116 203 FunFam MYB-related transcription factor 20 73 - -
Vvi9g0116 203 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 17 147 - -
Vvi9g0116 203 Gene3D - 78 143 - -
Vvi9g0116 203 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Vvi9g0116 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Vvi9g0116 203 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Vvi9g0116 203 Pfam Myb-like DNA-binding domain 74 119 IPR001005 -
Vvi9g0116 203 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Vvi9g0116 203 SMART sant 20 70 IPR001005 -
Vvi9g0116 203 SMART sant 73 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0116 Vvi-Chr9 1161886 1162690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0116 18 174 MYB Transcription Factor Family AT5G40330 50.318 1.37e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi9g0116 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0116 K09422 - vvi:100249722 408.297