Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0115 ATGAGTAATTGGCTGGGATTTTCTCTGACTCCCCACCTGAGAATCGACGAGGGTTTTGGGAGAGATGAGCAGCACCAGCAACAAGGAGGTTTCGTCATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTATCGATCCTTTCAGGCGTCCAAGTGGAAGTGAAGATTGGAGATATGAGAACGATATGGGTGGCACTGATCCAAGCGGAGAGGCTCCAAAGCTTGAAGATTTCTTGGGTTGCTGTTACTCAAATTCTTCAGATGATAGAGTGAATGTGAATGCGCCACCAAGCTTCAACTCCAATGGAGAGCTTGAAGCAGACCCACCTCCACAAATCCAACCTTATCATCATCACTACAACGAGACCCCACAAACCCTAGTCACAACAACTCAGATTCAGCAGCAGTGTGGTTCAAACCCTAGTGGCCATAATAATTGTTTTTATCATGTACCTTTTGATCATAGTGCAACTTCAGTTTCTGGGTTCAAGTCATGGTTGCGCCAAACACCATTTTCTGGGGAAAAATCTTCTTCTTCTGCTTCTGCTGATCAGCCAAACAATTGTAACTTTCAATCACTGTCACTCACAATGAAACCAGTTCCTCGGAAATCAATTGATACTTTTGGGCAAAGAACTTCTCAATATCGTGGTGTAACTAGGCACAGATGGACTGGAAGATATGAAGCCCATTTGTGGGACAACAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGGCAAGGTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTCTTAGTAGTTATGAGAAAGAGCTTGAAGAGATGAAGAACATGACCAGGCAAGAGTTTGTAGCCAACTTAAGAAGGAAAAGTAGTGGGTTTTCAAGAGGGGCGTCTGTGTACAGAGGAGTGACGAGACACCATCAGCATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCAGGCAACAAGGACTTGTATTTAGGAACATTCAGCACACAAGAGGAGGCTGCTGAAGCCTATGATATTGCTGCGATAAAGTTCAGAGGGACAGGTGCAGTGACCAATTTCGATATCAGTAGGTACGACGTCAAGAGGATTTGCTCGAGCTCCACCCTCATTGCCGGCGACCTTGCCAAACGGTCACCAAAAGAATCGGCTCCCCCCGCCCTGGAGGACTACAACTCTTGCGCATCCTCCACCTCGCCCCAACCCCTTCTGGCCATAACCAATGGCGAGCCCTCGGAGGAATTGCCTGACATGGTGTGGAGTTCCAACACCGAAGACCATCAGCAGCAGCAGAACACGAGCATCATAGCCACTGATACAGCGCTGGTGGCTTCAACTAGCCGGACTTCCTCGAGTCTGCACAGTCCAAAATGCCCCGGCGGTGGCAGTGGTGGACCAGGGGCTGATCAGTTTGGAGCTGGAGGTGCTGATTACCCTCAGGCATACTTCTCATTGCATGGCTCCAAGTATGAAGCCAGCAACGCCGGCGGTGATCACCCTGGGTCGGACCGGTTGAGGAATCTGGGCATGGTTCATCACCAGGTGCCCATGTTTGCACTCTGGAATGAGTGA 1620 0.4889 MSNWLGFSLTPHLRIDEGFGRDEQHQQQGGFVMPLRSDGSLCVIDPFRRPSGSEDWRYENDMGGTDPSGEAPKLEDFLGCCYSNSSDDRVNVNAPPSFNSNGELEADPPPQIQPYHHHYNETPQTLVTTTQIQQQCGSNPSGHNNCFYHVPFDHSATSVSGFKSWLRQTPFSGEKSSSSASADQPNNCNFQSLSLTMKPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTGAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPALEDYNSCASSTSPQPLLAITNGEPSEELPDMVWSSNTEDHQQQQNTSIIATDTALVASTSRTSSSLHSPKCPGGGSGGPGADQFGAGGADYPQAYFSLHGSKYEASNAGGDHPGSDRLRNLGMVHHQVPMFALWNE* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0115 539 FunFam AP2-like ethylene-responsive transcription factor 312 373 - -
Vvi9g0115 539 CDD AP2 312 373 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 68 443 - -
Vvi9g0115 539 CDD AP2 213 279 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 ProSiteProfiles AP2/ERF domain profile. 214 277 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 SMART rav1_2 313 377 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 SMART rav1_2 214 283 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 MobiDBLite consensus disorder prediction 173 192 - -
Vvi9g0115 539 SUPERFAMILY DNA-binding domain 213 279 IPR016177 GO:0003677
Vvi9g0115 539 ProSiteProfiles AP2/ERF domain profile. 313 371 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 Pfam AP2 domain 214 269 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 Pfam AP2 domain 312 363 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 MobiDBLite consensus disorder prediction 462 489 - -
Vvi9g0115 539 FunFam AP2-like ethylene-responsive transcription factor ANT 213 279 - -
Vvi9g0115 539 MobiDBLite consensus disorder prediction 393 416 - -
Vvi9g0115 539 SUPERFAMILY DNA-binding domain 312 373 IPR016177 GO:0003677
Vvi9g0115 539 Gene3D AP2/ERF domain 213 279 IPR036955 GO:0003700|GO:0006355
Vvi9g0115 539 Gene3D AP2/ERF domain 313 373 IPR036955 GO:0003700|GO:0006355
Vvi9g0115 539 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vvi9g0115 539 PRINTS Ethylene responsive element binding protein signature 353 373 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0115 Vvi-Chr9 1150521 1153564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0115 1 399 AP2-EREBP Transcription Factor Family AT1G72570 51.860 1.38e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi9g0115 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0115 K09285 - vvi:100259954 1035.79