Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0113 ATGATGATGAGTGCAAGAAACAGGTCTCCTTTCACAGCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTTCAAATATATAGTGTCAGGAGTACCAATCCCAGCTGATCTCATCTGCACTGTCAAAAGAAGCTTGGACTCTTCATTGTCTTCAAGGCTATTTCCTCACCAACCCATTGGGTGGGGTTGTTTTCAGATGGGGTTTGGCAGGAAAGCAGACCCAGAGCCAGGAAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCAAAGAAGCATACCCAGATTCAAAATACTGTGAGAGACACATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTATTTCAGCTACAAACCCTTCACCAACCATCTCATCAATCAACTCAAATCCTTCCTCCACCACCACCAATTCTTACTCTCTCTCTCCTCTCTCTCCTCTCTCTTCTTCAATGACTTCTGAAACCTCCCATCCCCATCACCATTCCTACCACAACACCTCTCTTTATCCCTTCCTCTACCCTCATCCCTCCTCTTCTAGACCTCCTGGTTCTTGCCTATCACCTCAGGCCACCAGCAGTTACAGCACCCATCATCTGTTTTTGGACTCTGGGTCTTATTCCCAGGCTGATAGGGATTACAGGCATCATCATGGAATGAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGGACTGTAAGGGGCCTACATGATTCATATACTCCATTAACAATGAGTTCCTCCAAGGGATACTCTCACTTTCAGTATCAAAGCCCCGCTGATAATCCCAAACAGCAGCAAGAACAGCAAGAGCAGCAGCACTGCTTTGTCTTGGGCACTGATTTCAAATCGTCAAGGCCAATTAAAGTAGAGAGAGATGGTGAAGCCCAGAAGCCTCTCCACCATTTCTTTGGAGAGTGGCCTCTAAAGAACAGAGACTCCTGGCTTGACCTTGAGGAGGATCCACCAACCCATGCATCATTCTCCACCACCCAGCTCTCAATTTCAATCCCAATGTCCTCACACAAGCTTCTTGCATCGGATTCCAGAATCCAAACTGGTACTTAG 1092 0.4716 MMMSARNRSPFTASQWQELEHQALIFKYIVSGVPIPADLICTVKRSLDSSLSSRLFPHQPIGWGCFQMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVISATNPSPTISSINSNPSSTTTNSYSLSPLSPLSSSMTSETSHPHHHSYHNTSLYPFLYPHPSSSRPPGSCLSPQATSSYSTHHLFLDSGSYSQADRDYRHHHGMREGVDERAFFPEASGTVRGLHDSYTPLTMSSSKGYSHFQYQSPADNPKQQQEQQEQQHCFVLGTDFKSSRPIKVERDGEAQKPLHHFFGEWPLKNRDSWLDLEEDPPTHASFSTTQLSISIPMSSHKLLASDSRIQTGT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0113 363 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Vvi9g0113 363 MobiDBLite consensus disorder prediction 117 161 - -
Vvi9g0113 363 MobiDBLite consensus disorder prediction 105 168 - -
Vvi9g0113 363 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi9g0113 363 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi9g0113 363 Pfam QLQ 10 40 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi9g0113 363 Pfam WRC 76 118 IPR014977 -
Vvi9g0113 363 MobiDBLite consensus disorder prediction 259 279 - -
Vvi9g0113 363 PANTHER GROWTH-REGULATING FACTOR 5 9 350 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0113 Vvi-Chr9 1135239 1136542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0113 8 321 GRF Transcription Factor Family AT3G13960 38.889 2.10e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi9g0113 WRC 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0113 - - vvi:100247998 659.448