Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0101 ATGACCATTGAAGAACCTGAGCCTAACCCCACTTCTGATCACATCCTGGATTGGCTGGAGGATTCGGTTTCGTTTCTTCCGTCTTTCTTGGATGATCCCTACGGCTCCGGCGATATCAGCAGCTATCAATGGTGGGATCAGGGCCAGGAGCTGGACCAGGATTTTACTAGTTATACTGATAATTCAATCAACTGCAACTCCGCTGCCGTCGCCGGTGCTGTAACTCCCTGTGATCCTGCGAGTGTTGATCATCTCCAACTGTCTGATTCGTCGAAGAAGAGGAAATCCCCGGATGACCCAGCTCCCAGAGTGGCCCCAAATCATCAGAGAAAGAATCAGGGCCGGCGCGCTAGTGAGACTGAAGATGGGGATGCGGTTGAGGAGGCTGTGGCAGCGAAGAAATCCGTCGGAAGCAAGAAAGCCACAGGTAAGGCTACAGGGAATAACTGTAATAACAGTAATAGCAAGGAAGGGAGGTGGGCTGAGCAGCTGCTCAACCCCTGCGCCACCGCCATCACCGCTGGAAATCTATCCCGTGTTCAGCACCTCTTGTATGTCCTCCATGAGCTGGCATCCTCCACCGGCGACGCCAACCACCGGCTGGCTGATCATGGCCTGAGAGCCCTGTCCCACCACCTATCCTCCTCTGTCTCTGTAGGGCCTATCACCTTTTCTTCCACAGAGCCGAGGTTTTTCCAGCGATCCCTTCTCAAATTCTATGAGGTTAGTCCCTGGTTCGCCTTCCCCAACAATATTGCAAATACATCCATCCTGCAAATTCTCAATGGGGTGCCATCCCGCTCGCGAAATCTTCACATCCTTGATATTGGAGTCTCCCATGGTGTGCAATGGCCGACGCTGCTCGAGGCCTTGAGTCGTCGGTCTGGCGGCCCTCCTCCACTGGTTCGCCTCACGGTCATCGCCGCCACCAGTGACAATGATCAGAACACAGAGACCCCATTTTCAATAGCTCCACCAGGGGACAACTTCTCGGCCAGACTCCTCTCCTTTGCCAAGTCCATGAACATCAATCTGCAGATCAACAGGCTTGACAACCACCCATTACAAAGCCTCAGTCCCCAGCTCATCGACACCTCCCCTGATGAAACCCTAATCGTTTGCGCGCAGTTCAGGCTGCACCATCTGAATCACAACACCCCTGATGAAAGAACTGAGTTCTTGAAGGTACTGAGGAAGCTGGAGCCAGAAGCAGTTATTCTAAGTGAAAACAACATGGACTGCAGCTGCACCAACTGCGGGGACTTTGCAACTGGGTTCTCCAGGAGGATAGAGTACTTATGGAAGTTTCTGGATTCGACAAGTGCAGCATTCAAGGGCCGAGAAAGTGAAGAGAGAAGGGTGATGGAAGGAGAAGCTGCCAGGGCATTGACAAACCCAGGAGAGATGAATGAGGGAAAAGAGAAATGGTGTGAGAGAATGCGGGGGGTCGGGTTTGCAGGAGAGGTATTTGGGGAGGACGCCATTGATGGAGCTCGGGCGTTGTTGAAGAAGTACGACAGCAACTGGGAAATGAGAGTAGAAGAGAAAGATGGGTGTGTGGGGTTGTGGTGGAAAGGGCTACCTGTTTCCTTTTGTTCACTCTGGAGGCTGGAGGATACCAAACCAAATAACAGTTAG 1638 0.5244 MTIEEPEPNPTSDHILDWLEDSVSFLPSFLDDPYGSGDISSYQWWDQGQELDQDFTSYTDNSINCNSAAVAGAVTPCDPASVDHLQLSDSSKKRKSPDDPAPRVAPNHQRKNQGRRASETEDGDAVEEAVAAKKSVGSKKATGKATGNNCNNSNSKEGRWAEQLLNPCATAITAGNLSRVQHLLYVLHELASSTGDANHRLADHGLRALSHHLSSSVSVGPITFSSTEPRFFQRSLLKFYEVSPWFAFPNNIANTSILQILNGVPSRSRNLHILDIGVSHGVQWPTLLEALSRRSGGPPPLVRLTVIAATSDNDQNTETPFSIAPPGDNFSARLLSFAKSMNINLQINRLDNHPLQSLSPQLIDTSPDETLIVCAQFRLHHLNHNTPDERTEFLKVLRKLEPEAVILSENNMDCSCTNCGDFATGFSRRIEYLWKFLDSTSAAFKGRESEERRVMEGEAARALTNPGEMNEGKEKWCERMRGVGFAGEVFGEDAIDGARALLKKYDSNWEMRVEEKDGCVGLWWKGLPVSFCSLWRLEDTKPNNS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0101 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 146 525 IPR005202 -
Vvi9g0101 545 MobiDBLite consensus disorder prediction 112 129 - -
Vvi9g0101 545 Pfam GRAS domain family 162 536 IPR005202 -
Vvi9g0101 545 ProSiteProfiles GRAS family profile. 152 536 IPR005202 -
Vvi9g0101 545 MobiDBLite consensus disorder prediction 87 105 - -
Vvi9g0101 545 MobiDBLite consensus disorder prediction 82 156 - -
Vvi9g0101 545 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0101 Vvi-Chr9 910682 912319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0101 1 536 GRAS Transcription Factor Family AT3G13840 53.394 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi9g0101 GRAS 2.4e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0101 - - vvi:100261706 1074.69