Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0100 ATGTCCGCACACGACCAAGCAGCGGCGGCGATCCTCGCTCAAGTAGCCCTAGCCGCCGACGGAGCCATCCTCGGCTTAGCCCTAGCCTACGTCGCCGTTCGCAGTTTTATCAGGCTCTCATCCACCTCCTCCGCCCTCCGCCAAATTGATCAGTCTCCGTCTTTCCGCGTCTCCGATCTCCGATCCCTCCTCTCTCCCTCCAGCGACGATGAATCCGACCAGTCTACGTCGTCCGATGGCCTGCTCGTCGTCGTCCGCGGCACCGTCGAGGCGAAATCGGCCATTGACGGCAACTGGAAGAGCTTGCGTCCCAATGTTCTCGTCTCTCACGAATCAGGCGAGAAAGGTGTCATCTTGCAGCGAACGCAAACGTGTATATACAATGAGTGGAGGGGTTTTTTTGGATGGACTTCTGATATACGCACCTTGTTTGCAAGATCCTGGAAAGAAAAAGAATCTACCTCATTAAGAACGGTTCCTTTTATTCTTGTTGAAGGTGGTCGGTGGCCACAATCTGATTATGTCATTGTGAACATGGATGGCTCAAGACATCCCTTACCTCTTACAACAGTTTATCATCAATTACAGCCTGTTAATGCTTCTCCTTATACGTTCCTCCAAGCACTTTTTGGTCATGACTACCCTGTTGGTCTTCTGGATGAAGAGAAACTTCTGCCCTTAGGGAAGGAGATAACTGCAGTTGGCATTTGCAGTTTAAAGAACGGAATTCCTGAGATCAAATCATGCAAGGATCTTCCTTATTTCCTGTCTGAGATGAGTAAGGATCAGATGGTGGTGGATCTTGTCTTTAAGTCAAAAGTACTATTTTGGAGTGGTGTCATTCTTGGTTCAGTGTCCATTGGTGTTCTTGGCTATGCTGTTGTGAGGAACTGGAATAGATGGAAGGAGTGGAGGCAACAGAGAGGGGTCCGGCCACCAAGCCAAGCTGTTACTGATGATACTGATACCCAGATTGCAGAAGATGATGCAGGGGACGTTCCAGATGGAGAGCTGTGTGTCATCTGCCTGATGAGGAGAAAGAGGTCTGCATTCGTTCCATGTGGGCATCTCGTATGTTGCCAACGCTGTGCCCTATCAGTTGAGCGTGAGTTGTCCCCAAAATGTCCTGTGTGTCGACAGATAATCCGAAGTTCTGTGAGGATATATGGCTCTTGA 1176 0.4957 MSAHDQAAAAILAQVALAADGAILGLALAYVAVRSFIRLSSTSSALRQIDQSPSFRVSDLRSLLSPSSDDESDQSTSSDGLLVVVRGTVEAKSAIDGNWKSLRPNVLVSHESGEKGVILQRTQTCIYNEWRGFFGWTSDIRTLFARSWKEKESTSLRTVPFILVEGGRWPQSDYVIVNMDGSRHPLPLTTVYHQLQPVNASPYTFLQALFGHDYPVGLLDEEKLLPLGKEITAVGICSLKNGIPEIKSCKDLPYFLSEMSKDQMVVDLVFKSKVLFWSGVILGSVSIGVLGYAVVRNWNRWKEWRQQRGVRPPSQAVTDDTDTQIAEDDAGDVPDGELCVICLMRRKRSAFVPCGHLVCCQRCALSVERELSPKCPVCRQIIRSSVRIYGS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0100 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 390 IPR013083 -
Vvi9g0100 391 CDD RING-HC_SPL2-like 334 380 - -
Vvi9g0100 391 SMART ring_2 339 378 IPR001841 -
Vvi9g0100 391 SUPERFAMILY RING/U-box 332 385 - -
Vvi9g0100 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 391 IPR044247 GO:0004842
Vvi9g0100 391 ProSiteProfiles Zinc finger RING-type profile. 339 379 IPR001841 -
Vvi9g0100 391 Pfam Zinc finger, C3HC4 type (RING finger) 337 384 - -
Vvi9g0100 391 Pfam E3 Ubiquitin ligase 142 290 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0100 323 388 C3H Transcription Factor Family AT3G06140 40.909 2.44e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0100 K15688 - vvi:100242895 733.791