Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0092 ATGGGTTTGAAGAAGGGTACGTGGAAATATGCGTTTCCCAGCTGTTTCAGGCATACCGGCTCCAGGAATGTTGCTTTGAAACGAAGGTCGCTGAAGAGGCTGTGTAGTTCTCGCATTGCGACAGACCTTGATGTGTTTACTCTGGCGGAGGTGAGGGCGATTACTCATAACTTCTCTTCGAGTAGTTTTCTGGGTGAAGGTGGGTTCGGACCAGTGTACAAGGGGGTCATTGATGAGAAGGTTAGGCCTGGATTTAAGGCTCAGCAGGTGGCTGTTAAGGTGCTGGATTTGGATGGTCAGCAAGGCCATAGGGAGTGGCTGGCTGAAGTAATCTTTCTTGGGCAATTGAGGCATCCCCATCTGGTGAAATTGATTGGATATTGCAGTGAGAAGGAGCAAAGGGTGCTGATATATGAATACATGGCTAAGGGAAACTTGGAGAACCAGCTCTTCAGAAGATATTCAGCTTCTTTGCCATGGACAACAAGAGTCAAGATTGCTCTAGAGGCTGCAAAGGGCCTTGCTTTCCTCCATGAAGAGGAGAATCCAGTGATATTCCGAGATTTCAAGGCTTCAAACATCTTATTGGACTCGGACTATACTGTTAAGCTCTCTGATTTTGGCCTAGCAAAGGATGGTCCAGAAGGTGATGAAACGCATGTCACGACTCGGGTTATGGGGACAGAAGGCTATGCTGCTCCGGAATATATCATGACTGGTCATTTGACAACAATGAGCGACGTATACAGCTTTGGTGTAGTGCTTTTAGAGCTGCTAACAGGGAGACGGTCCACGGACAAGAGCCGGCCCAGTAGAGAGCAGAACCTGGTGGGGTGGGCATTGCCATTTTTGAAGGATCCCCAGAAGCTCAAGCGAATAATCGACCCCAAGCTCGAAGGGATGTACTCAACAGAAGGAGCCAAGAGGGTAGCCATGCTGGCCAACCAATGCTTGAGCCAAAAGGCCAAGTGCAGACCCAGAATGAGCTCTGTGGTCAAGACTTTAGAATCTCTCATGGACTTGGCAGACACTGGATTTATGCCTTTTGTCTACATTGTCCCAGCAGAAGGCCAAAAGAAAGGTGAAGCACAAATTACCTTAAGGGTGTGTGGGAAAGATGAAGCAGAAGCAGAAGCAGAAGCTAATCACAACAATGGAAAAGAAGCTGGAAAAAAAGACGAAAATAAAGAGATTGGGCTGCTCAAATGTCCTAAAGGCCTTAGACATACGCATAGATTGAGTCAATTCAGGTCAGGTCCTGTATACTCTGATAATAAATTTTGTATCACTCTTCAAACTGGCATGAACTGCACAAATCAGTAG 1323 0.4686 MGLKKGTWKYAFPSCFRHTGSRNVALKRRSLKRLCSSRIATDLDVFTLAEVRAITHNFSSSSFLGEGGFGPVYKGVIDEKVRPGFKAQQVAVKVLDLDGQQGHREWLAEVIFLGQLRHPHLVKLIGYCSEKEQRVLIYEYMAKGNLENQLFRRYSASLPWTTRVKIALEAAKGLAFLHEEENPVIFRDFKASNILLDSDYTVKLSDFGLAKDGPEGDETHVTTRVMGTEGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGRRSTDKSRPSREQNLVGWALPFLKDPQKLKRIIDPKLEGMYSTEGAKRVAMLANQCLSQKAKCRPRMSSVVKTLESLMDLADTGFMPFVYIVPAEGQKKGEAQITLRVCGKDEAEAEAEANHNNGKEAGKKDENKEIGLLKCPKGLRHTHRLSQFRSGPVYSDNKFCITLQTGMNCTNQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0092 440 FunFam Serine/threonine-protein kinase BIK1 26 140 - -
Vvi9g0092 440 Gene3D Transferase(Phosphotransferase) domain 1 141 345 - -
Vvi9g0092 440 Gene3D Phosphorylase Kinase; domain 1 19 140 - -
Vvi9g0092 440 CDD STKc_IRAK 64 338 - -
Vvi9g0092 440 PANTHER OS01G0588500 PROTEIN-RELATED 40 338 - -
Vvi9g0092 440 FunFam Serine/threonine-protein kinase PBS1 141 345 - -
Vvi9g0092 440 ProSiteProfiles Protein kinase domain profile. 58 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0092 440 Pfam Protein tyrosine and serine/threonine kinase 62 335 IPR001245 GO:0004672|GO:0006468
Vvi9g0092 440 SUPERFAMILY Protein kinase-like (PK-like) 36 336 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0092 Vvi-Chr9 845751 847480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0092 45 381 Glycoside Hydrolase AT3G07070 47.941 1.43e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi9g0092 PK_Tyr_Ser-Thr 4.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0092 - - vvi:100265158 865.529