Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0072 ATGTCGGATTCTGAAGCTTTGCTTAAGCTCAAGCAATCTTTTACCAATACTAATGCTCTCGATTCTTGGGAGCCTGGTTCTGGGCCTTGCTCTGGAGATAAGGAATGGGGTGGACTGGTTTGTTTCAATGGCATTGTCACAGGTCTTCATTTGGTAGGAATGGGATTATCCGGGAAAATCGACGTCGAAGCTTTGATTGCGATCACGGGTCTTCGGACCATCAGCATTGTAAACAATTCTTTTTCGGGTTCCATCCCGGAATTCAACCGATTGGGGGCTTTGAAGGCCATTTTCATATCTGGGAATCAGTTTTCCGGCGAGATTCCGCCAGATTACTTTGTGAGAATGGCTTCTTTGAAAAAACTATGGCTTTCCGATAATAAATTCACCGGCGCAATTCCTTTGTCAATTCAGCTTCTTTCTCATCTTATTGAGCTGCACCTTGAAAACAACCAATTCACCGGAACTATCCCGGATTTTAATCTGCCAACGTTGAAGTCGCTTAATCTTTCGAATAATAAATTAAAGGGAGCCATCCCCGATAGTTTATCGAAATTTGGTGGGAGCGCATTTGCAGGCAATGCGGGACTGTGTGGGGAAGAATTGGGAAATGGGTGCAATGATCATGGGATTGATCTCGGCACAGACAGGTCCCGCAAGGCCATTGCAGTGATCATATCAGTGGCTGTCGTGATTATATCCCTTCTAATCATCGTGGTTTTTCTGATGAGGAGAAGAAAAGAGGAAGAATTCGACGTGCTTGAGAATGTTGACGAGTCAGTTGAGGTGCGAATATCGGGGTCTAGCAGAAAGGAGGGATCAAGCACCAGCAGAAGGGCCATAGGCTCGAGCCGGAGGGGCTCCAACCGTTCGAGCCAGGTCAAGAGCAGCATGAAGGAGGACATGGTGGTGGTGAATGAAGAAAAAGGTATTTTCGGGATGTCGGACTTGATGAAAGCTGCTGCTGAGGTGCTTGGAACTGGCAGTTTGGGGTCGGCCTACAAGGCGGTGATGGCCACCGGCATTGCGGTGGTGGTGAAGAGGATGAAAGAAATGAATAGAGTAAGCAAAGAAGGATTCGATCTGGAGCTCAGGCGACTGGGCAGCCTGCAACACCCCAATGTTCTAAACCCTTTGGGTTACCATTTTCGAAAAGAGGAGAAGCTCATCATCTACGAGTACATTCCCAAAGGCAGTTTGCTATTTGTACTCCATGGTGATCGAGGACCCTCCCATGCGGAGCTCAATTGGCCAGCGCGTTTAAAGATCGTTCAAGGGATCGCTCGAGGATTGGGCTATCTCCACACCGAGCTAGCCTCATTGGACTTGCCCCATGGCAATCTCAAATCAAGCAATATCCTTCTCACCTTCGACCACGATCCATTACTCTCAGACTATGGATATAGCCCATTGATCAGCGTCAGCTTTGTTTCACAAGCCTTGTTCGCCTACAGGGCCCCCGAGGCCGTCCGGGACAATCAGATATCGCCCAAGTGCGACGTCTACTGCCTGGGAATCGTCATTCTTGAGATCCTCATTGGAAAATTTCCCACGCAGTATCTAAACAACAGCAAAGGCGGCACCGACGTGGTGGAATGGGCGGTGTCCGCCATTGCAGACGGGAGAGAAGCTGAGGTATTCGATCCCGAGATCGCAAGCTCCATAAACTCCATGGAAGAGATGGTGAAGCTCCTCCACATCGGGGTCGCTTGCGCCGAGAGCAACCCCGAGCAGCGACCGGACATAAAGGAGGCCATTAGAAGGATAGAGGAAATACATGTAGAGGGAGGCGGCAGCGGAGGAGGAGCTAGCCATGATAGAACCATTCAAGTTCTGCCGTCCCTCCGGGACGGATACGGAGAAGTGCCGGTGGCAGGACCGCAATCGAGCCCTCGGGAGGCGTATGGCGAGATCTCTCTGAATGGATCCGACAGCCTCGAAGAGAACCCCGGCGCCGGGCACCGCAACGACAACTTCTCATTTTCCATTTCCTAA 1995 0.5033 MSDSEALLKLKQSFTNTNALDSWEPGSGPCSGDKEWGGLVCFNGIVTGLHLVGMGLSGKIDVEALIAITGLRTISIVNNSFSGSIPEFNRLGALKAIFISGNQFSGEIPPDYFVRMASLKKLWLSDNKFTGAIPLSIQLLSHLIELHLENNQFTGTIPDFNLPTLKSLNLSNNKLKGAIPDSLSKFGGSAFAGNAGLCGEELGNGCNDHGIDLGTDRSRKAIAVIISVAVVIISLLIIVVFLMRRRKEEEFDVLENVDESVEVRISGSSRKEGSSTSRRAIGSSRRGSNRSSQVKSSMKEDMVVVNEEKGIFGMSDLMKAAAEVLGTGSLGSAYKAVMATGIAVVVKRMKEMNRVSKEGFDLELRRLGSLQHPNVLNPLGYHFRKEEKLIIYEYIPKGSLLFVLHGDRGPSHAELNWPARLKIVQGIARGLGYLHTELASLDLPHGNLKSSNILLTFDHDPLLSDYGYSPLISVSFVSQALFAYRAPEAVRDNQISPKCDVYCLGIVILEILIGKFPTQYLNNSKGGTDVVEWAVSAIADGREAEVFDPEIASSINSMEEMVKLLHIGVACAESNPEQRPDIKEAIRRIEEIHVEGGGSGGGASHDRTIQVLPSLRDGYGEVPVAGPQSSPREAYGEISLNGSDSLEENPGAGHRNDNFSFSIS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0072 664 ProSiteProfiles Protein kinase domain profile. 319 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0072 664 Gene3D Ribonuclease Inhibitor 1 191 IPR032675 -
Vvi9g0072 664 Gene3D Transferase(Phosphotransferase) domain 1 395 597 - -
Vvi9g0072 664 MobiDBLite consensus disorder prediction 624 664 - -
Vvi9g0072 664 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515
Vvi9g0072 664 SUPERFAMILY L domain-like 30 185 - -
Vvi9g0072 664 SUPERFAMILY Protein kinase-like (PK-like) 323 589 IPR011009 -
Vvi9g0072 664 MobiDBLite consensus disorder prediction 267 299 - -
Vvi9g0072 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 593 IPR046959 -
Vvi9g0072 664 Gene3D Phosphorylase Kinase; domain 1 284 394 - -
Vvi9g0072 664 Pfam Leucine rich repeat N-terminal domain 2 41 IPR013210 -
Vvi9g0072 664 Pfam Protein kinase domain 323 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0072 664 MobiDBLite consensus disorder prediction 265 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0072 Vvi-Chr9 653097 655698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0072 1 592 Receptor kinase-like Gene Family AT3G42880 48.445 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi9g0072 Pkinase 6.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0072 - - vvi:100853121 1235.71