Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0070 ATGCAGCATCAGAGGCTGAAACAGCAACAGCAAGCCTTGATGCAGCAAGCTCTTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGGAACATTCATACGCAGGTATCGGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTCCTGTTGAAGGCTGCAAGCTCGTTAGAAAGGAAAAGTCATCCTATGGATTCATCCACTACTTTGATCGCAGATCTGCTGCATTGGCTATATTGTCTCTAAACGGAAGGCATCTGTTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAAAGGGAGGACACATCAGGTCACTTCAACATTTTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTTTCCCAGTTGTTCAGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGGACGCCCAAAGTGCTATCAATGACATAACCGGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTGCTGGTTCCAATGATGATAAACAAAGTTCAGATGCCAAGAGTGTGGTAGAGCTGACCAATGGTTCATCAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTAATTGAGGAAGTTCGGGTTCAACGAGATAAGGGCTTTGGTTTTGTTAGATACAATACTCATGCTGAGGCTGCTCTGGCTATTCAGATGGGAAATACCCAGTCAATTCTGTGTGGCAAACCAATCAAGTGCTCATGGGGTAGCAAGCCAACTCCACCAGGAACAAGTTCAAACCCACTCCCCCCACCTGCAGCTGCACCTCTGCCAGGTCTTTCAGCCACGGACCTCCTAGCTTATGAGCGGCAACTAGCAATGAGCAAGATGGGCCATGCACTGATGCACCCTCAGGGGCAGCATCCTCTTAAGCAGGCAGCAATGGGAATGGGGGCCGCTGGAGCAAGCCAGGCAATATATGATGGCGGCTTCCAGAACGTTGCTGCTGCTCAGCAGCTCATGTATTACCAGTAA 1260 0.4833 MQHQRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNIHTQVSEPLLQEVFASTGPVEGCKLVRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSDGKETATNEAPDNNPQYTTVYVGNLAPEVTQLDLHRHFHTFGAGVIEEVRVQRDKGFGFVRYNTHAEAALAIQMGNTQSILCGKPIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGHALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAAAQQLMYYQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0070 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 333 IPR000504 GO:0003723
Vvi9g0070 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 324 IPR000504 GO:0003723
Vvi9g0070 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Vvi9g0070 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Vvi9g0070 419 SUPERFAMILY RNA-binding domain, RBD 251 341 IPR035979 GO:0003676
Vvi9g0070 419 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Vvi9g0070 419 CDD RRM2_PUB1 137 216 - -
Vvi9g0070 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Vvi9g0070 419 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Vvi9g0070 419 SMART rrm1_1 139 212 IPR000504 GO:0003723
Vvi9g0070 419 SMART rrm1_1 54 123 IPR000504 GO:0003723
Vvi9g0070 419 SMART rrm1_1 259 329 IPR000504 GO:0003723
Vvi9g0070 419 MobiDBLite consensus disorder prediction 215 257 - -
Vvi9g0070 419 CDD RRM3_PUB1 258 334 - -
Vvi9g0070 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Vvi9g0070 419 CDD RRM1_PUB1 55 125 - -
Vvi9g0070 419 Gene3D - 1 136 IPR012677 -
Vvi9g0070 419 FunFam Oligouridylate-binding protein 1C 236 337 - -
Vvi9g0070 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 336 - -
Vvi9g0070 419 Gene3D - 137 217 IPR012677 -
Vvi9g0070 419 Gene3D - 236 338 IPR012677 -
Vvi9g0070 419 SUPERFAMILY RNA-binding domain, RBD 52 217 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0070 Vvi-Chr9 621420 627511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0070 45 333 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 9.33e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0070 K13201 - vvi:100260069 793.497