Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0064 ATGGCGCCTTCTGAGCAACTCCCTAATGTAGTTATGGAAGAGGATGATTACAGTGAAACCGAAGGATCCGACTCTGAAGATTCGAACGATTCCCAAGATGACCCAACATATGACATTTTTGAGGAAACTCAATCTGGGTTTTCAAATCTCTCAATGGAGAAGAAGTCAAAATCTCGTATTCAGAAAGAAATGGATATGGGTTTTGTGGAAGACCTGGATGACGTGGAAATAGTTGCGCCAGTGCTTGATGAGAAAGATGAGAAAAGCTTTGAGATGGTTCAAAAAATGATAGAAGCTGGTCAGTTAGAGAAACTGAAAGTGGATCAATGCAAGGTTTATTTGAGGAAGAATGGATTGAGACTCACAGGCAATAAAGAGACACTGATTCAACGCATTAAGGAGCATCTAGGTATCATAAATGGTGGTGGTGAGAAGAAATACCCAGTCTCTAGCTTTGTCCTGAACTGTAAAGGGGATGCTTGCACAGGAGATGTGGTTATGTTTGAACAAAATGTTTATGAAATGTTCAATATAGCTTCTAGGAGTGCCAGTGGCCCTCCATGTGGTTCCAGGATTATTGCAGGCCACATTGTGAAAGACAGCTATGGTGCTGCCAAACAACAGCATACATTCACGATTGAAGTCCTATGGAGCAAAGGCGAGAAACCGCTCCCCCCACTTCATCCCCTACTAATTAAGGGCCGAAACCTCTATCGTTTGAAGACTCTGAGACAGAGATGGGAAGATGAAGGGGAGAGGCAGAAAGTTTTAATGGAAAAGCATTCCAGGGGTTCTCTTGCCAGGTCTGACAGAGAAGCAAGGATCCAAGAGAAGGAAATGCGCAAGAACAATAGGCATTTGAAGGTTACCAGAAAAGCTGAGCTGAAGAAAAATGAATCTCAGTCGAATCCAACAAAGCCAGGTTTATCAGTTGATTCAGGAAAATTGGTCCAACCTCCAACACAACAAAAGCAAAGCAGCAATCAGGATCAACAATATCCTCCACTTCAAAGGGAAAATTTATGTCCCAATACTTGCAAAGAAAACATTGGGGTTCCACAAAATATGCTCAAGTTTCCTCAGGAAATTCAGCACAGTAAGCATGATGGGTGTTTTGCTAATAATCATAGCCATAGGGAACCATTGAGAAGCATGAACCATTTTCCTCCAGTCATTCCATTACAGAGGGGCTATCCTCCAATGCCCCCTTCATGGGGCCACAACGACAAACAAGTATGCAGACATTATGCTAAAGGAAGATGCTACTTTGGAGATAACTGTAAATTTTTGCATGATTTGAGAAAAGAGAATATGTGA 1317 0.4207 MAPSEQLPNVVMEEDDYSETEGSDSEDSNDSQDDPTYDIFEETQSGFSNLSMEKKSKSRIQKEMDMGFVEDLDDVEIVAPVLDEKDEKSFEMVQKMIEAGQLEKLKVDQCKVYLRKNGLRLTGNKETLIQRIKEHLGIINGGGEKKYPVSSFVLNCKGDACTGDVVMFEQNVYEMFNIASRSASGPPCGSRIIAGHIVKDSYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQRWEDEGERQKVLMEKHSRGSLARSDREARIQEKEMRKNNRHLKVTRKAELKKNESQSNPTKPGLSVDSGKLVQPPTQQKQSSNQDQQYPPLQRENLCPNTCKENIGVPQNMLKFPQEIQHSKHDGCFANNHSHREPLRSMNHFPPVIPLQRGYPPMPPSWGHNDKQVCRHYAKGRCYFGDNCKFLHDLRKENM* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0064 438 SMART sap_9 102 136 IPR003034 -
Vvi9g0064 438 SUPERFAMILY SAP domain 92 136 IPR036361 -
Vvi9g0064 438 ProSiteProfiles Zinc finger C3H1-type profile. 408 434 IPR000571 GO:0046872
Vvi9g0064 438 Gene3D SAP domain 101 137 IPR036361 -
Vvi9g0064 438 MobiDBLite consensus disorder prediction 12 37 - -
Vvi9g0064 438 MobiDBLite consensus disorder prediction 300 341 - -
Vvi9g0064 438 Pfam CCCH-type zinc finger 412 432 IPR041367 -
Vvi9g0064 438 Pfam SAP domain 102 136 IPR003034 -
Vvi9g0064 438 PANTHER SAP DOMAIN-CONTAINING PROTEIN 13 333 - -
Vvi9g0064 438 SMART c3hfinal6 408 433 IPR000571 GO:0046872
Vvi9g0064 438 MobiDBLite consensus disorder prediction 1 38 - -
Vvi9g0064 438 Gene3D - 405 438 - -
Vvi9g0064 438 MobiDBLite consensus disorder prediction 277 341 - -
Vvi9g0064 438 ProSiteProfiles SAP motif profile. 102 136 IPR003034 -
Vvi9g0064 438 SUPERFAMILY CCCH zinc finger 409 432 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi9g0064 SAP 2.2e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0064 - - vvi:100242956 863.218