Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0059 ATGCATGGAATTTCAAGTGATGTTGCACAAATCCAAGAAGTGATGGGGGAGAAGATGGCTCACTTCATCCACCATGTATTTACCTTCATCTGCGGTTATGCGGTTGGGTTCTGGAGGTCATGGAAGGTATCTCTAGTAGTCCTCTCAGTCATCCCATTGATGATGTTCTGTGGTATTGCTTATAAGGCCATTTATGTCGGTTTAACTGCAAAAGAAGAGGTTTCTTATAGGATAGCTGGCAGTGTAGCTGAGCAGGCGATCAGTTCAATTAGAACTGTGTTTTCTTTTGTTGCTGAGGATCATCTGGCTGAAAGATATGCAGAATTGTTGCAGAAATCAGTGCCCTTTGGGGTGAAGCTCGGGTTTGCAAAAGGTGCAGGCATGGGAGTAATCTACCTAGTTACTTATTCAACATGGGCATTGGCTTTCTGGTATGGATCCATCTTGGTTGCTAGAGGAGAAATTTCAGGAGGTGCAGCCATTGCCTGTTTCTTTGGAGTCAATTTAGGTGGCAGAGGCCTGGCATTGTCATTGTCATATTTTGCTCAATTCGCCCAAGGAACCGTAGCAGCAAGCAGGGTGTTTGAAATTATTGATAGAGTCCCTGAGATAGATCCCTACAGCCCAGAAGGAAGGAAGCTCCCAAGTATCAGGGGAAGGATAGAGTTCAAAGGTGTTACTTTTGCATACCCGTCTCGTCCCACAGCTGCAATTCTCCGGTCTCTCAATCTAGAGGTTCCATCTTCAAAGACCCTTGCTTTGGTTGGTTCCAGTGGAGGTGGCAAGTCCACCATTTTTGCCCTTATAGAGAGGTTCTATGACCCTGTAAAGGGAATCATTACCTTGGATGGTCATGATATAAGGACCCTGCAAGTGAAGTGGCTTAGAGGTCAGATAGGCATGGTAGGCCAAGAGCCAGTCCTCTTCACCACCAGCATTCTCGAAAATGTGATGATGGGGAAGGAGAATGCCACCAAGAAAGAGGCCATTGCTGCTTGTGTTGCTGCCAATGCTCACAGCTTCATCTCTGGCCTTCCTCAAGGCTATGATACTCAGGTTGGAGACAGGGGAACCCAACTCTCAGGAGGCCAGAAACAGCGCATTGCGTTGGCTCGAGCTCTGACCACAGATCCCAGGATCCTCCTCCTAGATGAGCCCACCAGTGCTCTAGACCCTGAGTCTGAGTCAGTAGTCCAACAAGCCATTGACAAGATCTCTGCTGGCCGGACAACCCTTGTCATTGCTCACAGACTAGCAACTGTAAGAAATGCGCACACCATTGTTGTTCTTAATCACGGTGCAGTTGTTGAAACTGGTAACCATCATAAGCTCATGGAAAAATCCGGGGCCTATTACAATCTTGTCAAGCTTGCTTCTGAAGCTGTATCCAAGCCTTTGTCAAAACAAGATGGTAGTATTATTAAGGCCACTAAGCTTCCCTCTTATGAGAGGTCAGTTTATGAAGTGTCAAAATCAAAGTACATGAATGAAGCCTCAAGATCAAAGTACTTAACATCGATGCAAGAACAATACAAAGAAGAGGAGGAAGAAAAGCCAGAGCCAAAGCCTGGGAAAGTTCTAGTTTCAGAGATATTTAAGTTGCAAAGGCCAGAGCTTCTGATGCTTTTACTGGGGTTTCTCTTGGGCATGCATGCTGGTGCAATTCTCTCCATTTTTCCCTTTATTTTAGGCCTAGCCCTTCAAATATACTTTGGCGATGACACATCCAAAATGAAAAGAGAAGTGGGTGTGCTCTCTTTAGTAATTGTTGGGCTTGGGTTTGGGTGTGTAATAACCTTGGTAGGCCAGCAAGGTTTCTGTGGCTGGGCAGGCACAAAGCTTACCAAGAGGGTGAGAGACCGCTTATTCAGATCCATACTAAAACAAGAACCGGGTTGGTTCGATTTCGACGATAATTCGACTGGAGTCCTTGTCTCTAGGCTCTCCATTGATTGTGTCACTTTTCGATCAGTTCTTGGTGACCGCTTCTCAGTCCTACTAACGGGGTTGAGCTCAGCTGCTGTTGGTCTTGGGATATCATTCTTTCTTGATTGGAGGCTAACTCTCTTGGCTGCAGCTCTCACTCCACTCACCCTTGGGGCAAGCTACTTCAGCTTGATTATCAACGTCGGACCAAGATTAGATAACAGTTCTTATGCCAGAGCTAGCAACATTGCTGCTGGGGCAGTCTCAAACATAAGAACAGTGACAACATTCTCAGCGCAACAACAGCTAGTCCACACCTTCGATCAAGCCTTATCAGAGCCAAAGAAGAAATCAGTGAAAAGGTCACAAGTCCTAGGCCTAGCTCTTGGATTTTCCCAAGGGGCCATGTATGGAGCTTACACTCTAACCCTTTGGTTTGGTACTTATCTTATTAAAGAAGACAAAGCAAACTTTGGTGATGTGTTCAAGATCTTCCTCATTCTTGTGATGAGCTCATTCTCAGTTGGGCAATTAGCTGGTCTGGCACCTGACACTTCCATGGCTGCGACTGCAGTTCCTGCTGTTTTCAGCATCATCAACCGCAGGCCGATGATCAGCAGTGATGGAGAGAAAGGTAGGAAGGTTGAAAGATCAAAACCAGTGGATGTAGAGCTGAAAATGGTGACTTTTGCATACCCTTCTAGGCCAGAGGTGACTGTGTTGAGGGAATTTTGTCTGAAGGTGAAAGGTGGCAGCATGGTGGCATTGGTAGGGGGAAGTGGGAGTGGGAAATCAACAGTGGTATGGCTGATACAGAGGTTTTATGATCCAAACCAAGGGAAGGTACTGATGGGAGGAGTTGATATTAAGGAGATGAATGTGAAGTGGCTGAGGAGGCAGATAGCTTTGGTGGGTCAAGAGCCTGCATTGTTTGCTGGGAGTATTAGAGAGAATATTGCTTTTGGAAACCCTAATGCTTCATGGGCTGAGATTGAAGAAGCTGCTAATGAAGCTTACATTCACAAGTTCATCAGTAGCCTCCCTCAAGGTTATGAAACACAGGTTGGTGAGAGTGGGGCCCAGCTATCTGGTGGCCAAAAACAAAGAATAGCAATAGCAAGGGCCATATTGAAGAAATCCAAGGTGCTACTCCTAGATGAAGCAAGCAGTGCGTTGGACCTTGAGTCAGAGAAGCATGTCCAAGATGCCTTGAGGAAGGTGTCCGAAAGGGCCACAACCATAGTAGTTGCCCACAGGCTTTCTACCATCAGAGAAGCCCATATGATTGCAGTAGTTAAAGATGGTGCAGTCACTGAGTATGGCAGCCATGACACCCTCTTGGCTTCCCATCTCAATGGTGTCTATGCTAGCTTGGTTAGGGCTGAGACTGAAGCCAGTGCTTTTTCTTGA 3336 0.4631 MHGISSDVAQIQEVMGEKMAHFIHHVFTFICGYAVGFWRSWKVSLVVLSVIPLMMFCGIAYKAIYVGLTAKEEVSYRIAGSVAEQAISSIRTVFSFVAEDHLAERYAELLQKSVPFGVKLGFAKGAGMGVIYLVTYSTWALAFWYGSILVARGEISGGAAIACFFGVNLGGRGLALSLSYFAQFAQGTVAASRVFEIIDRVPEIDPYSPEGRKLPSIRGRIEFKGVTFAYPSRPTAAILRSLNLEVPSSKTLALVGSSGGGKSTIFALIERFYDPVKGIITLDGHDIRTLQVKWLRGQIGMVGQEPVLFTTSILENVMMGKENATKKEAIAACVAANAHSFISGLPQGYDTQVGDRGTQLSGGQKQRIALARALTTDPRILLLDEPTSALDPESESVVQQAIDKISAGRTTLVIAHRLATVRNAHTIVVLNHGAVVETGNHHKLMEKSGAYYNLVKLASEAVSKPLSKQDGSIIKATKLPSYERSVYEVSKSKYMNEASRSKYLTSMQEQYKEEEEEKPEPKPGKVLVSEIFKLQRPELLMLLLGFLLGMHAGAILSIFPFILGLALQIYFGDDTSKMKREVGVLSLVIVGLGFGCVITLVGQQGFCGWAGTKLTKRVRDRLFRSILKQEPGWFDFDDNSTGVLVSRLSIDCVTFRSVLGDRFSVLLTGLSSAAVGLGISFFLDWRLTLLAAALTPLTLGASYFSLIINVGPRLDNSSYARASNIAAGAVSNIRTVTTFSAQQQLVHTFDQALSEPKKKSVKRSQVLGLALGFSQGAMYGAYTLTLWFGTYLIKEDKANFGDVFKIFLILVMSSFSVGQLAGLAPDTSMAATAVPAVFSIINRRPMISSDGEKGRKVERSKPVDVELKMVTFAYPSRPEVTVLREFCLKVKGGSMVALVGGSGSGKSTVVWLIQRFYDPNQGKVLMGGVDIKEMNVKWLRRQIALVGQEPALFAGSIRENIAFGNPNASWAEIEEAANEAYIHKFISSLPQGYETQVGESGAQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHVQDALRKVSERATTIVVAHRLSTIREAHMIAVVKDGAVTEYGSHDTLLASHLNGVYASLVRAETEASAFS* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0059 1111 FunFam ABC transporter B family member 1 854 1105 - -
Vvi9g0059 1111 PANTHER ABC TRANSPORTER B FAMILY 3 457 IPR039421 -
Vvi9g0059 1111 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 716 856 - -
Vvi9g0059 1111 SMART AAA_5 892 1084 IPR003593 GO:0016887
Vvi9g0059 1111 SMART AAA_5 248 434 IPR003593 GO:0016887
Vvi9g0059 1111 Pfam ABC transporter transmembrane region 4 167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0059 1111 Pfam ABC transporter transmembrane region 542 814 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0059 1111 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 221 457 IPR003439 GO:0005524
Vvi9g0059 1111 Pfam ABC transporter 886 1031 IPR003439 GO:0005524
Vvi9g0059 1111 CDD ABC_6TM_Pgp_ABCB1_D2_like 552 847 - -
Vvi9g0059 1111 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 186 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0059 1111 Pfam ABC transporter 239 388 IPR003439 GO:0005524
Vvi9g0059 1111 SUPERFAMILY ABC transporter transmembrane region 531 845 IPR036640 GO:0005524|GO:0016020
Vvi9g0059 1111 Gene3D - 211 459 IPR027417 -
Vvi9g0059 1111 FunFam Uncharacterized protein 486 709 - -
Vvi9g0059 1111 ProSitePatterns ABC transporters family signature. 1004 1018 IPR017871 GO:0005524|GO:0016887
Vvi9g0059 1111 FunFam ABC transporter B family member 4 211 464 - -
Vvi9g0059 1111 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 543 829 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi9g0059 1111 SUPERFAMILY ABC transporter transmembrane region 4 206 IPR036640 GO:0005524|GO:0016020
Vvi9g0059 1111 Gene3D - 863 1105 IPR027417 -
Vvi9g0059 1111 Gene3D ABC transporter type 1, transmembrane domain 716 861 IPR036640 GO:0005524|GO:0016020
Vvi9g0059 1111 Gene3D ABC transporter type 1, transmembrane domain 491 709 IPR036640 GO:0005524|GO:0016020
Vvi9g0059 1111 Gene3D ABC transporter type 1, transmembrane domain 4 463 IPR036640 GO:0005524|GO:0016020
Vvi9g0059 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 456 IPR027417 -
Vvi9g0059 1111 ProSitePatterns ABC transporters family signature. 360 374 IPR017871 GO:0005524|GO:0016887
Vvi9g0059 1111 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 865 1101 IPR003439 GO:0005524
Vvi9g0059 1111 CDD ABC_MTABC3_MDL1_MDL2 221 458 - -
Vvi9g0059 1111 CDD ABC_MTABC3_MDL1_MDL2 865 1103 - -
Vvi9g0059 1111 CDD ABC_6TM_Pgp_ABCB1_D1_like 4 194 - -
Vvi9g0059 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 860 1102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0059 Vvi-Chr9 505535 509976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0059 555 1107 Calmodulin-binding Proteins AT2G36910 38.380 3.83e-112 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0059 K05658 - mnt:21388521 1722.98