Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0056 ATGGAAGACGATGAGGAGATCCAGTCACACCCGTCGCCGGACACCGGATCTCCGGCGTCACCTCGGAGTAATGGCCGGATCACGGTGACGGTGGCGGCCGCGCCTCCTCCGCAGAACACCTTGACCCTGGCGCTTCCGATACAGCAGGCGAGGACCGCCGGCAACGGTGGTGGGGGAGGCGGTGGCCGGGAGGATTGCTGGAGCGAGGGAGCGACGTCGGTGCTGATTGACGCTTGGGGTGAGCGGTATCTGGAGCTGAGTAGGGGAAATCTGAAACAGAAACACTGGAAGGATGTTGCGGATATTGTGAGCAGCCGTGAGGATTACACGAAAACTGCGAAAACCGATATTCAGTGCAAAAATCGGATCGATACGGTGAAGAAAAAGTACAAGCTTGAGAAGGCGAAGATCGCCGCCGGCGGTGGTCCGAGCAAATGGCCGTTCTATCAACGCCTCGATCATTTGATCGGACCCACAGCGAAGATCGCCTCTGCCAGTCCCGCCACCGCCACGCCGTTGCCGCTGCAGAACGTGCCTCTAGGCATCCCGGTGGGAATGAGGTCAGTTCACCATCAGCAGCCCCAGCAGAAGAATCCCAAGCAGAAGCAGCAGTTGCGAAGGCGAGCTCCGGTGGATTCCGATTCATCACAGTCAGAGCCAGAGGCCTCACCAGACTCCACTGACAGTTTTCCGCCAGAAACCTTTGAAAGAAAGAGGCCTAGGATGCAGAGAGAGTTGAATTCAAACACCCCTCGAAGTGCACCAGTCCGGAGCCGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGCTGCAGATAAAAATTGGAGCAACTCAGTGAGGGAATTGACTCAAGCAATTCTAAAATTTGGGGAAGCATATGAGCAAGCAGAGACTTCAAAGTTGCAGCAAGTGGCGGATATGGAGAGGCAGAGAATGAAGTTTGCCAAGGAGCTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACTCAATTGGAGATATCTCAGCTGAACCATGGGAGAAGGGTTGGGAATAACAGTATTCACCGAAACAACAACAATAACAATAACAACAATAGTGATAGCAGCAACTAG 1095 0.5425 MEDDEEIQSHPSPDTGSPASPRSNGRITVTVAAAPPPQNTLTLALPIQQARTAGNGGGGGGGREDCWSEGATSVLIDAWGERYLELSRGNLKQKHWKDVADIVSSREDYTKTAKTDIQCKNRIDTVKKKYKLEKAKIAAGGGPSKWPFYQRLDHLIGPTAKIASASPATATPLPLQNVPLGIPVGMRSVHHQQPQQKNPKQKQQLRRRAPVDSDSSQSEPEASPDSTDSFPPETFERKRPRMQRELNSNTPRSAPVRSRGGGGGGGGGGSAADKNWSNSVRELTQAILKFGEAYEQAETSKLQQVADMERQRMKFAKELELQRMQFFMKTQLEISQLNHGRRVGNNSIHRNNNNNNNNNSDSSN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0056 364 MobiDBLite consensus disorder prediction 1 37 - -
Vvi9g0056 364 MobiDBLite consensus disorder prediction 342 364 - -
Vvi9g0056 364 MobiDBLite consensus disorder prediction 188 277 - -
Vvi9g0056 364 Pfam Myb/SANT-like DNA-binding domain 64 155 IPR044822 -
Vvi9g0056 364 Gene3D - 67 132 - -
Vvi9g0056 364 MobiDBLite consensus disorder prediction 11 37 - -
Vvi9g0056 364 MobiDBLite consensus disorder prediction 215 230 - -
Vvi9g0056 364 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 26 342 IPR044823 -
Vvi9g0056 364 MobiDBLite consensus disorder prediction 231 245 - -
Vvi9g0056 364 FunFam trihelix transcription factor ASIL2 67 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0056 Vvi-Chr9 477083 478177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0056 1 347 Trihelix Transcription Factor Family AT3G14180 47.085 7.63e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi9g0056 Myb_DNA-bind_4 3.6e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0056 - - vvi:100241240 630.557