Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0053 ATGGCCGCCGGAGAAGAGAAGAGCAATGATTTTTATGCCGTTCTAGGGTTGAAAAAGGAATGCACCGCCTCCGAGCTCAGAAATGCGTACAAGAGACTTGCCCTGATGTGGCACCCAGATCGTTGCTCCTCGTCGGGAAACTCGAAATTCGTGGAAGAAGCGAAGAAGAAATTTCAGGCCATACAAGAAGCCTATTCAGTTCTCTCTGATGCGAATAAAAGGTTTCTGTACGACGTTGGAGCCTACGACAGCGATGATGACGAAAACGGAATGGGGGATTTTTTGAATGAGATGGCGGTTATGATGAGCCAAACCAAGTCCAATGAAAATGGGAAGGAGAGCTTTGAGGAGTTGCAGGAGCTCTTTGAGGATATGTTCCAAAGGGATGTCGACGCATTCAACTCTGCCTCTCATCACCCCATGAACTCTTTCCCCAGTTCTACTTCCACTTCTTCCTACTGCGAAAGCTCCAATGCCAACAACAAGCGGAATTCGGCTGAAATGGGCTCTGGAAGGATGATGAGTGCAGGGGAGTCCTCTGCTTTTGATGCCCACTTTCAGAGCTTCTGCTTTGGGGCGGCACGCCAGGGAGATTTCAGGAGGGGGAAAGGAGCAAGAGGAGGAATTCCAGGAGGAGCCAACGGTAGACGAAGAAGAACGGGTAGAAAGCAAAAGGTTTCATCTGGCCATGATGTCTCCTCCAATGACTACTACTCTCATGTTTACACTTAA 732 0.4891 MAAGEEKSNDFYAVLGLKKECTASELRNAYKRLALMWHPDRCSSSGNSKFVEEAKKKFQAIQEAYSVLSDANKRFLYDVGAYDSDDDENGMGDFLNEMAVMMSQTKSNENGKESFEELQELFEDMFQRDVDAFNSASHHPMNSFPSSTSTSSYCESSNANNKRNSAEMGSGRMMSAGESSAFDAHFQSFCFGAARQGDFRRGKGARGGIPGGANGRRRRTGRKQKVSSGHDVSSNDYYSHVYT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0053 243 CDD DnaJ 10 70 IPR001623 -
Vvi9g0053 243 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Vvi9g0053 243 SMART dnaj_3 9 73 IPR001623 -
Vvi9g0053 243 Gene3D DnaJ domain 7 137 IPR036869 -
Vvi9g0053 243 PANTHER PUTATIVE, EXPRESSED-RELATED 2 201 - -
Vvi9g0053 243 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vvi9g0053 243 MobiDBLite consensus disorder prediction 137 172 - -
Vvi9g0053 243 MobiDBLite consensus disorder prediction 200 243 - -
Vvi9g0053 243 MobiDBLite consensus disorder prediction 227 243 - -
Vvi9g0053 243 Pfam DnaJ domain 10 78 IPR001623 -
Vvi9g0053 243 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vvi9g0053 243 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vvi9g0053 243 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vvi9g0053 243 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vvi9g0053 243 MobiDBLite consensus disorder prediction 137 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0053 Vvi-Chr9 460707 463094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0053 12 78 C2H2 Transcription Factor Family AT1G74250 45.588 1.70e-10 58.9