LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g0046	ATGGCGACTCCCACTAGAGCTCTATCTCAGAAGGAACAGGACATACAGATGATGCTCGCCGCCGAGGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAACGTTACGTCTTCAAGCGCCGCAATGATGGGATTTACATCATCAACCTTGGAAAAACATGGGAGAAGCTGCAGCTTGCAGCCAGGGTGATTGTTGCGATTGAGAACCCTAAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGGCAGAGGGCAGTTTTGAAGTTTGCTCAATACACTGGTGCTCATGCGATTGCTGGAAGGCACACACCAGGTACATTCACCAATCAGCTCCAGACATCTTTCAGTGAGCCCCGTCTTCTCATCCTCACAGACCCAAGAACTGATCACCAGCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACAAGGGAAAGCACAGCATTGGCTGTCTGTTCTGGCTGTTGGCAAGGATGGTTCTGCAGATGCGTCGCACTATTGCTCCCGGACACAAGTGGGATGTGATGGTGGATCTGTTTTTCTACAGGGAGCCTGAGGAGCCGAAGGAACAAGAAGGGGATGAAGTGGTTGCTGCCCCAGATTATGGAATAACAGATTACCAAGCCACAGCACTTGGTGGTCTCGGCGGCGGTGATTGGGGTGCCCCAATTACTGATGCCCCCCAGTGGGGCGCTGATGTGCCTGCAGTGGCTCCCATTCCTGCAGTTCCAGGAAGCAATTGGGGGGATGCAGCTCCAATGCCAAGTGCAGTTCCAATTGCAACAGATGGATGGGATGCTGCAGCTGCACCACCAGTAGCAGTCCCCCCCCCAGTAGTTGAAGGTGTTCCTCCTCCTGCCGGCTGGGAGTGA	939	0.524	MATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPPPVVEGVPPPAGWE*	313

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g0046	312	Gene3D	-	14	219	-	-
	Vvi9g0046	312	SUPERFAMILY	Ribosomal protein S2	10	200	IPR023591	-
	Vvi9g0046	312	Pfam	Ribosomal protein S2	117	182	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Vvi9g0046	312	Pfam	Ribosomal protein S2	18	112	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Vvi9g0046	312	CDD	RPS2	18	184	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Vvi9g0046	312	Hamap	40S ribosomal protein SA [rps-0].	2	255	IPR027498	GO:0003735\|GO:0006412\|GO:0015935
	Vvi9g0046	312	NCBIfam	30S ribosomal protein S2	11	206	IPR005707	GO:0003735\|GO:0006412\|GO:0015935
	Vvi9g0046	312	PRINTS	Ribosomal protein S2 signature	94	111	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Vvi9g0046	312	PRINTS	Ribosomal protein S2 signature	119	136	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Vvi9g0046	312	PRINTS	Ribosomal protein S2 signature	45	54	IPR001865	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g0046	Vvi-Chr9	427442	429821	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g0046	1	293	Cytoplasmic Ribosomal Protein Gene Family	AT3G04770	71.429	1.48e-147	414

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g0046	K02998		-	vvi:100254883	567.385

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