Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0046 ATGGCGACTCCCACTAGAGCTCTATCTCAGAAGGAACAGGACATACAGATGATGCTCGCCGCCGAGGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAACGTTACGTCTTCAAGCGCCGCAATGATGGGATTTACATCATCAACCTTGGAAAAACATGGGAGAAGCTGCAGCTTGCAGCCAGGGTGATTGTTGCGATTGAGAACCCTAAGGACATCATTGTTCAGTCTGCTAGGCCCTATGGGCAGAGGGCAGTTTTGAAGTTTGCTCAATACACTGGTGCTCATGCGATTGCTGGAAGGCACACACCAGGTACATTCACCAATCAGCTCCAGACATCTTTCAGTGAGCCCCGTCTTCTCATCCTCACAGACCCAAGAACTGATCACCAGCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACAAGGGAAAGCACAGCATTGGCTGTCTGTTCTGGCTGTTGGCAAGGATGGTTCTGCAGATGCGTCGCACTATTGCTCCCGGACACAAGTGGGATGTGATGGTGGATCTGTTTTTCTACAGGGAGCCTGAGGAGCCGAAGGAACAAGAAGGGGATGAAGTGGTTGCTGCCCCAGATTATGGAATAACAGATTACCAAGCCACAGCACTTGGTGGTCTCGGCGGCGGTGATTGGGGTGCCCCAATTACTGATGCCCCCCAGTGGGGCGCTGATGTGCCTGCAGTGGCTCCCATTCCTGCAGTTCCAGGAAGCAATTGGGGGGATGCAGCTCCAATGCCAAGTGCAGTTCCAATTGCAACAGATGGATGGGATGCTGCAGCTGCACCACCAGTAGCAGTCCCCCCCCCAGTAGTTGAAGGTGTTCCTCCTCCTGCCGGCTGGGAGTGA 939 0.524 MATPTRALSQKEQDIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYREPEEPKEQEGDEVVAAPDYGITDYQATALGGLGGGDWGAPITDAPQWGADVPAVAPIPAVPGSNWGDAAPMPSAVPIATDGWDAAAAPPVAVPPPVVEGVPPPAGWE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0046 312 Gene3D - 14 219 - -
Vvi9g0046 312 SUPERFAMILY Ribosomal protein S2 10 200 IPR023591 -
Vvi9g0046 312 Pfam Ribosomal protein S2 117 182 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 Pfam Ribosomal protein S2 18 112 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 CDD RPS2 18 184 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 Hamap 40S ribosomal protein SA [rps-0]. 2 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vvi9g0046 312 NCBIfam 30S ribosomal protein S2 11 206 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 94 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 119 136 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 45 54 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 136 147 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 157 171 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PRINTS Ribosomal protein S2 signature 15 33 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 ProSitePatterns Ribosomal protein S2 signature 2. 119 143 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 PANTHER 40S RIBOSOMAL PROTEIN SA 1 297 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vvi9g0046 312 ProSitePatterns Ribosomal protein S2 signature 1. 15 26 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vvi9g0046 312 FunFam 40S ribosomal protein SA 14 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0046 Vvi-Chr9 427442 429821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0046 1 293 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.429 1.48e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0046 K02998 - vvi:100254883 567.385