Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0035 ATGTGTGGTGGTGCCATCATCTCCGACTTCATTCCGGCGAGCCGCTGCCGCCGGGTCGACGAGGATTACTTCCCCGCCCTCAAAAAACGCACCTCCGGCAACCACTGTTCCAAGTCGCTGTGGTCCGAAGCCGTCGAGGACGATGACGACGACGACTTCGAGGCCGATTTTCTGGGTTTCAAGGATGACTCCGACGACGAGGAGGATGACATCAAGCCTTCCGCTTTCTCCGCTGCGAAGCCACATGGCTATACAGGTATAAAATCTGTGGAATTTAATGGGCAAGCTGAAAAATCTGCAAAGAGAAAGAGGAAGAATCAGTATAGAGGAATCCGACAACGCCCTTGGGGAAAATGGGCTGCAGAGATCCGTGATCCAAGAAAGGGGGTTCGAGTTTGGCTTGGGACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCTCGGAGGATCCGAGGCAAGAAAGCAAAAGTTAATTTTCCTGATGAAACTCCTTTGACTGCTCCAAAGCGCACCATCAAGGCAAATGCTCAAAAGCTAATTCCAAAGGGTAGCCCTAACTCTTCCCATTCGAATCTGAACCAGAGTTTTAATTTCATGAACAACTCTGATCAGGAATACTATAGTAGTTTAATGGATGAGAAACCATCAACCAATCAATATGGGTATCCAGATTCCTTCCCTGCCAATGGCGAAGTTGGACTAAAATCACTTGCCCCATCTGAGAATGGTCGCATGTATTTTAATTCAGACCAAGGAAGTAACTCTTTTGATTGTTCTGACCTTGGATGGGGAGAGCAGGGAGCAAAGACCCCAGAAATCTCATCGGTTCTTTCAGCTACCCTTGAAGTGCCTGTTGAAGAAAATACTCCAAATGGGCTTTCTGAGGATCTCTCAGCTTTTGAGTCCCAGATGAAGTACTTTCAGATCCCTTATCTTGACGGAAACTGGGAAGCTTCAATGGATGCCTTACTCAGCGGGGATGCTGCTCAGGATGGTGGAAACCCAATGGACCTTTGGAGCTTTGATGATCTGCCTACTGTGGTGGGGGGAGTTTTCTGA 1071 0.4818 MCGGAIISDFIPASRCRRVDEDYFPALKKRTSGNHCSKSLWSEAVEDDDDDDFEADFLGFKDDSDDEEDDIKPSAFSAAKPHGYTGIKSVEFNGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDETPLTAPKRTIKANAQKLIPKGSPNSSHSNLNQSFNFMNNSDQEYYSSLMDEKPSTNQYGYPDSFPANGEVGLKSLAPSENGRMYFNSDQGSNSFDCSDLGWGEQGAKTPEISSVLSATLEVPVEENTPNGLSEDLSAFESQMKYFQIPYLDGNWEASMDALLSGDAAQDGGNPMDLWSFDDLPTVVGGVF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0035 356 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Vvi9g0035 356 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Vvi9g0035 356 SUPERFAMILY DNA-binding domain 107 166 IPR016177 GO:0003677
Vvi9g0035 356 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Vvi9g0035 356 PANTHER DNA-BINDING DOMAIN 77 212 IPR044808 GO:0003700|GO:0009873
Vvi9g0035 356 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Vvi9g0035 356 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Vvi9g0035 356 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Vvi9g0035 356 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Vvi9g0035 356 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0035 Vvi-Chr9 355114 357354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0035 1 356 AP2-EREBP Transcription Factor Family AT1G53910 46.859 1.18e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi9g0035 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0035 K09286 - vvi:100248027 700.279