Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0032 ATGTTGCATACTCAAGGAATTTCAAATCACACTTGTGGTCTCCTTGCAGTCACATGTGGGAAAACTTCTGAATGTAAACAGGAGCATGAAACTTCGAATGATCGACCAAGATACCCTTTTCCTGACTTTGTTTCTTCAGGGCGATTGGAGGTTCAAACGCTGACCAGTCCGAGTCCTGATGAGTTTCGTAGAGTTTTTGAATCAGTTCAGCCAAATTTTGTGTACTTTCAAGGAGAACAACTTCAGAATGATGAAGTTGGGTCTCTAGTATGGGGAGGTGTTGAGTTGTCCAGTGCAGAAGATATATGTGGGCTCTTTGGTTCCAAATTGCCAACCACTGTTTATCTTGAGATCCCAAATGGAGAAAAATTGGCAGAGGCACTTCACTCTAAGGGAATCCCATATGTGATATATTGGAAGAATGCATTTTCTTGTTATGCTGCTTGCCATTTTCGTAATGCATTATTTTCAGTGGTACAGAGCTCATCTACTCATACATGGGATGCTTTCCAACTTGCATATGCATCCTTTAGACTTTACTGTGTTCGCAATAACCATGTCCTTCCAGCCAACAGCCACAAAGTTAGTGGTAAGTTGGGTCCACGCCTTCTTGGGGACCCTGCAACAATTGATGTTCCTCCTCCTGAGGTAGATGCTGGGGAAGATGAAGAAGGCTCTCTGGGCACTCTTCCTGCTATAAAGATATATGATGATGATGTGGGCATTAGGTTTCTTGTTTGTGGAGAGCCATGCATGTTGGATTCATGCTTATTCGAATCTTTAGAAGATGGTCTCAATGCCCTCTTGAGCATTGAAATACGCGGGAGCAAACTTCATAACAGAGTTAGTGCCCCTCCACCACCTCTTCAGGCAGGGACGTTTTCTCGTGGTGTTGTGACCATGCGATGTGATTTATCCACCTGTAGTTCAGCTCATATCTCGCTTCTGGTCTCAGGTAGTGCACAAACTTGCTTTGATGATCAGCTCTTGGAGAATAATATAAAGAAGGAAGTCACTGAACAGAGTCAACTAGTTCATGCACTGCCATACTCTGAGGGAAACAAGCCACCTTTGTCTGAACCTCGGAGGTCTGCTTCAATTGCTTGTGGGGCAGCAGTATTTGAAGTTTGTGCCAAAGTTCCTGCTTGGGCTTCACAGGTTCTGAGGCAGCTCGCTCCAGATGTTTCCTATCGTAGTTTAGTTGCACTTGGCATTGCTAGCATTCAAGGATTGGCTGTTGCTTCTTTTGAGAAAGATGATGCCAATCGCCTTCTTTTCTTCTGTACAAGGCAGGGTAAATATATCCATCCTAACAATTTTACTCCCAGCAGGCTTCCAAGCTGGTTGAAACCACCTCCTCCTAGTAGAAAGAGAGTTGAACCATCCCAGGACACAAGTCCTGGACATCATAATGGTCTCGTGTTTGCAAATCAAGCTACTTCTAGAAGGATAGACAAAGAAGACAAAAAAACTGGATTAGTGAATGGTGTGACCATGCCTCTACTACCTGCTGGGCAGAGACTGAAAGTTGCTGCAATGAGGCCTATTCCTCATATTCGTCACCATAAAATGTTGCCCTTTTCTGGAATTTCTGAGGCAGATGGGCATGATGGAGGCCAAGTTAAGGCTAACTTGTCAGTGCCCCCCCCTACGAAGCATAGTATTGTAGGATCAACTTCTGCAATGCATCGAAAATCATTTTCAAGCTCATATCAAGCGAAGCAGATAATTTCCTTGAATCCCCTGCCTTTGAAGAAACATGGTTGTGGCAGAAGCCCTATACGGGTTTGCTCTGAGGAGGAGTTTCTAAAGGATGTGATGCAGTTTTTAAACCTTCGTGGACACACTCGTCTCATTCCTCAAGGAGGACTTGCCGAGTTCCCTGATGCTATTCTCAATGCAAAGCGTCTTGACCTCTATAACTTGTATAGGGAGGTGGTTTCAAGAGGTGGCTTTCATGTTGGCAATGGCATCAACTGGAAAGGACAGGTGTTCTCCAAGATGCGCAATCACACGGTCACTAACCGAATGACTGGTGTCGGGAATACACTGAAGAGACATTATGAAACTTACCTTTTAGAATATGAATTAGCACATGACGATGTAGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGCATTTGTGGTGAGTGGGCCCACTTTGGCTGTGATAGAAGGCAGGGCCTTGGTGCCTTCAAGGATTATGCAAAAACAGATGGGCTAGAATACATTTGTCCACAATGCAGCGTTACAAATTTTAAGAAGAAAGCGAATAAAGCCCCAAATGGTTTCTCCTGA 2325 0.4452 MLHTQGISNHTCGLLAVTCGKTSECKQEHETSNDRPRYPFPDFVSSGRLEVQTLTSPSPDEFRRVFESVQPNFVYFQGEQLQNDEVGSLVWGGVELSSAEDICGLFGSKLPTTVYLEIPNGEKLAEALHSKGIPYVIYWKNAFSCYAACHFRNALFSVVQSSSTHTWDAFQLAYASFRLYCVRNNHVLPANSHKVSGKLGPRLLGDPATIDVPPPEVDAGEDEEGSLGTLPAIKIYDDDVGIRFLVCGEPCMLDSCLFESLEDGLNALLSIEIRGSKLHNRVSAPPPPLQAGTFSRGVVTMRCDLSTCSSAHISLLVSGSAQTCFDDQLLENNIKKEVTEQSQLVHALPYSEGNKPPLSEPRRSASIACGAAVFEVCAKVPAWASQVLRQLAPDVSYRSLVALGIASIQGLAVASFEKDDANRLLFFCTRQGKYIHPNNFTPSRLPSWLKPPPPSRKRVEPSQDTSPGHHNGLVFANQATSRRIDKEDKKTGLVNGVTMPLLPAGQRLKVAAMRPIPHIRHHKMLPFSGISEADGHDGGQVKANLSVPPPTKHSIVGSTSAMHRKSFSSSYQAKQIISLNPLPLKKHGCGRSPIRVCSEEEFLKDVMQFLNLRGHTRLIPQGGLAEFPDAILNAKRLDLYNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTVTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPQCSVTNFKKKANKAPNGFS* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0032 774 SMART bright_3 597 701 IPR001606 GO:0003677
Vvi9g0032 774 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 3 773 IPR042293 -
Vvi9g0032 774 MobiDBLite consensus disorder prediction 459 473 - -
Vvi9g0032 774 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Vvi9g0032 774 Gene3D - 593 701 IPR036431 GO:0003677
Vvi9g0032 774 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Vvi9g0032 774 SMART ARID_2 593 696 - -
Vvi9g0032 774 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Vvi9g0032 774 CDD PHD_ARID4_like 706 757 - -
Vvi9g0032 774 MobiDBLite consensus disorder prediction 442 473 - -
Vvi9g0032 774 SUPERFAMILY ARID-like 597 711 IPR036431 GO:0003677
Vvi9g0032 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 758 IPR013083 -
Vvi9g0032 774 CDD ARID 598 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0032 Vvi-Chr9 331577 339205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0032 1 772 ARID Transcription Factor Family AT3G43240 64.000 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi9g0032 ARID 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0032 - - vvi:100251584 1588.16