Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0028 ATGGCTAGGGTTCATCCTCAATCACTGCTTTCTTCTGCTCACTGCTACTTCACTTCCAAACAAGAAGTTTTTACTATATGGATGAAGTCTCTAGTACTGCATGGAAAAGGATGCACTGTGTTTGATTCAAACGGGGGAATCGTGTATCGTGTTGATAACTATGACCGCAAATGTAGCAATGAAGTTTACCTTATGGATTTCAGAGGCAAAGTTCTCTACACCATACTGAGAAAGAGATTTAAATTTTTCTGTTGCTGGGAGGGCTACTGTGCTGCTAAAGAGATTAAGCAAGGTAAGCCAGGGTTCCGGGTTAGATCGAAAACATTTGGAATTCTAAGAGGAGGTTCTCCATTTAAGGCGGTTGTGGGGTTGGATAAAAATCAACCATGTCAGATTAAGATAGAGAAGAGGACTAGTAGCAATTCAACATGCAAGATAGTAGATGAATTGGGGTTGCTTGTTGCAGAGGTAAAGAGAAAAACATCGAAGTGTGGAGTTGTGTTGGGAGATGATGTTTTGACAATGGTGGTGGAGCCTTATATTGATCACTCTCTCAGAGAGAGATTATTGATGTGGTGGAGATCGGCTTCTTTTATTCTCGACAAGGGTCAGAACGACGAAGTGCAGGACGAGAGCGAGAGCCTCCGCCTCTCCCCATCCAACACCTCCATGGCCGACACTCTCCAAAACCCTAACCCTAAGATTTCAGCCTACTACCAGACCAGAGCGGATCACCACGGCGTCGTCACCAGCGACTGGCTCGCCCAAGCTCAGGCCGCCGTTGGCCGCCACCCCGACGACCTCCCGCCCCCCAAGGTCGAAGATTCCGGCAAGCCTTTTAGCGTCATCGATGAGTTCAATAGCTGGCGGAAGCAGCCCGATTTGGCCGAGGCGGTGGCCGCGATTCGCGCTTTGGCGTCGGTGATTCGGTTCAGCCAGGCTACCACCATGATGGAACTGGAGATTGAGCTCAAGAAGGCTTCCGATTCTCTTAAATCATGGGACACAACCTCCATCTCTTTGACGGCTGGCTGCGATCTGTTCATGCGATATGTGACAAGAACTTCCGCTTTAGAATATGAGAACTTTAATTCAGCTAAATCTCGTTTGATTGAGCGTGCAGAAAGGTTTGGAGAGATATCTTATAAGGCACGCAGAATCATTGCAATGCTTGGTCAAGATTTTATATTTGATGGTTGTACCATTTTGGTGCATGGTTTCTCTAGAGTTGTCTTGGAAGTTCTGAAGACAGCAGCACAGAATAAGAAACTCTTTCGAGTTTTCTGCACAGAGGGAAGGCCAGACAGGACAGGACTACGACTATCCAATGAAATGGCAAAGCTTGATGTTCCTGTGAAGCTCTTAATAGACTCAGCAGTGGCATATACTATGGATGAGGTTGACATGGTATTTGTTGGGGCTGATGGAGTAGTTGAAAGTGGAGGTATAATTAACATGATGGGGACATATCAAATCGCATTGGTGGCTCACAGCATGAACAAACCAGTTTATGTTGCTGCTGAAAGCTACAAGTTTGCTCGTCTCTATCCATTGGACCAGAAAGACATGGCCCCCGCCCTACGCCCCATTGATTTTGGGGTTCCCATCCCTTCAAAGGTTGAGGTTGAAACATCTGCACGGGATTATACACCTCCTCAGTATCTCACATTGCTCTTTACAGATCTGGGTGTTCTCACCCCATCTGTGGATCTGGTCGCCCCCACCTGA 1728 0.4693 MARVHPQSLLSSAHCYFTSKQEVFTIWMKSLVLHGKGCTVFDSNGGIVYRVDNYDRKCSNEVYLMDFRGKVLYTILRKRFKFFCCWEGYCAAKEIKQGKPGFRVRSKTFGILRGGSPFKAVVGLDKNQPCQIKIEKRTSSNSTCKIVDELGLLVAEVKRKTSKCGVVLGDDVLTMVVEPYIDHSLRERLLMWWRSASFILDKGQNDEVQDESESLRLSPSNTSMADTLQNPNPKISAYYQTRADHHGVVTSDWLAQAQAAVGRHPDDLPPPKVEDSGKPFSVIDEFNSWRKQPDLAEAVAAIRALASVIRFSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYENFNSAKSRLIERAERFGEISYKARRIIAMLGQDFIFDGCTILVHGFSRVVLEVLKTAAQNKKLFRVFCTEGRPDRTGLRLSNEMAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVDLVAPT* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0028 575 FunFam Translation initiation factor eIF-2B subunit alpha 278 380 - -
Vvi9g0028 575 MobiDBLite consensus disorder prediction 210 231 - -
Vvi9g0028 575 SUPERFAMILY NagB/RpiA/CoA transferase-like 295 569 IPR037171 -
Vvi9g0028 575 Gene3D - 279 380 IPR042528 -
Vvi9g0028 575 Gene3D - 13 191 IPR038595 -
Vvi9g0028 575 Gene3D - 383 572 IPR042529 -
Vvi9g0028 575 MobiDBLite consensus disorder prediction 214 231 - -
Vvi9g0028 575 Pfam Initiation factor 2 subunit family 293 567 IPR000649 GO:0044237
Vvi9g0028 575 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 245 569 - -
Vvi9g0028 575 FunFam Translation initiation factor eIF-2B subunit alpha 383 572 - -
Vvi9g0028 575 Coils Coil 317 337 - -
Vvi9g0028 575 Pfam LURP-one-related 15 185 IPR007612 -
Vvi9g0028 575 SUPERFAMILY Tubby C-terminal domain-like 16 185 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0028 Vvi-Chr9 296820 301976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0028 191 569 Eukaryotic Initiation Factors Gene Family AT1G53880 80.679 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0028 K03239 - rcu:8276560 868.996