Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0022 ATGGATTCGATCAAATCCTTCAAGGGTTATGGCAAGGTGGACGAGCTGGAAGAGCGAGCATTTAAGCGCAAGACCCGCAAGCGCCTCATCATTCTCATTATCTCCTCAGTCGTGTTAGTGGCGGTCATCATCGGTGCGGTTGCAGGAACCTTGATCCACAAGAGCAAGTCTGAGTCCAACTCTGTCCCGGCCAGTCCCGTATCGCCGGCCACCTCCATCAAGGCTGTGTGCAGCGTCACTCAGTACCCAGATTCATGCGTCTCCAGCATCTCTTCCCTCGACACCTCCAACACCACCGACCCAGAGGAGCTCTTCAGACTCACTCTCCGGGTCGCCATTGCTGAGCTCTCCAAGCTATCTTCCTTACCCAGGCAGCTCAGCGCCAAGTCCAACGATGCCCAACTCAAGAAGGCGTTGGGAGTTTGCGAGACCGTGTTCGAAGACGCGATCGACCGGCTCAACGACTCCATCTCGTCGATGGAGGTGCGGGAGGGGGAGAAGCTGTTATCCGCCTCCAAGATCGACGACATCAAGACGTGGCTCAGCGCCACCATTACCGACCAAGAAACATGCTTGGACGCTCTTGAGGAGCTCAACTCCACTCTCCTGAATGAGGTCAAAACCGCGATGCAGAACTCCACGGTCTTCGCTAGTAACAGCTTGGCCATTGTGGCTAAACTAATCGGCATCCTCCACGACCTAGACATCCAGGTTCACCGCAAACTGCTGAGCTTCTCCAATTCCGATCAGTTTCCCGATTGGGTGGGGGCTGGCGAGCGGAGACTGCTCCAGGAAACAAAGCCAACCCCAGATGTGACGGTGGCGAAGGACGGCACTGGAGACTACGTGACCATAAAAGAAGCAGTGGCAATGGTGCCGAAGAAGAGTGAAAAGCGATTCGTGATATACGTAAAGGAAGGCAACTACTCGGAGAACATCATTTTAGACAAGAGCAAATGGAACGTCATGATATACGGCGACGGGAAGGATAAGAGCATCGTCTCCGGCAACTTGAACTTCATTGATGGGACCCCCACCTTCGCCACAGCCACTTTCGCCGCTGTGGGGAAGGGGTTTATAGCAAAGTACATGAGGTTCGAGAACACGGCAGGTGCGGCGAAGCATCAGGCGGTGGCCTTCCGCTCAGGGTCTGACATGTCCGTCTTCTACCAGTGCTCATTCGACGCCTTCCAGGACACCCTATACGCCCACTCCAACCGTCAGTTCTACCGGGAGTGCGACATCACAGGCACCATCGACTTCATCTTCGGCAACGCGGCTGTCGTCTTTCAGGCCTGCAAAATCCAGCCCAGGCAGCCAATGTCCAACCAATTCAACACCATTACTGCTCAGGGCAAGAAGGACCCCAATCAGAACACTGGCATTTCCATCCAAAAATGCTCCATCTCCGCTCTCAATACTCTGACAGCACCCACGTACCTGGGCAGGCCATGGAAGGCCTACTCCACCACCATCGTGATGCAGTCAAACATCGGCTCATTCTTGAACCCAAAAGGCTGGACGGAATGGGTCACCGGCGTCGACCCTCCCAGCACCATCTTCTATGCTGAGTTTCAAAACACTGGCCCAGGAGCTACCCTTGATCAAAGAGTCAAATGGGCTGGATTCATGACCAACATCACAGAGGATGAGGCAGCCAAGTTCACAGTCGGAACATTCATCCAAGGCGCCAGTTGGTTGTCAGAGAGCAGCGTGACCTTCGATGCATCCTTGTGA 1737 0.5446 MDSIKSFKGYGKVDELEERAFKRKTRKRLIILIISSVVLVAVIIGAVAGTLIHKSKSESNSVPASPVSPATSIKAVCSVTQYPDSCVSSISSLDTSNTTDPEELFRLTLRVAIAELSKLSSLPRQLSAKSNDAQLKKALGVCETVFEDAIDRLNDSISSMEVREGEKLLSASKIDDIKTWLSATITDQETCLDALEELNSTLLNEVKTAMQNSTVFASNSLAIVAKLIGILHDLDIQVHRKLLSFSNSDQFPDWVGAGERRLLQETKPTPDVTVAKDGTGDYVTIKEAVAMVPKKSEKRFVIYVKEGNYSENIILDKSKWNVMIYGDGKDKSIVSGNLNFIDGTPTFATATFAAVGKGFIAKYMRFENTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQACKIQPRQPMSNQFNTITAQGKKDPNQNTGISIQKCSISALNTLTAPTYLGRPWKAYSTTIVMQSNIGSFLNPKGWTEWVTGVDPPSTIFYAEFQNTGPGATLDQRVKWAGFMTNITEDEAAKFTVGTFIQGASWLSESSVTFDASL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0022 578 CDD PMEI-like_3 75 227 - -
Vvi9g0022 578 Gene3D - 265 578 IPR012334 -
Vvi9g0022 578 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Vvi9g0022 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 228 IPR035513 -
Vvi9g0022 578 NCBIfam pectinesterase inhibitor domain 68 227 IPR006501 GO:0004857
Vvi9g0022 578 PANTHER PECTINESTERASE 33 568 - -
Vvi9g0022 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 229 IPR035513 -
Vvi9g0022 578 Pfam Plant invertase/pectin methylesterase inhibitor 72 223 IPR006501 GO:0004857
Vvi9g0022 578 SUPERFAMILY Pectin lyase-like 268 574 IPR011050 -
Vvi9g0022 578 Coils Coil 192 212 - -
Vvi9g0022 578 FunFam Pectinesterase 265 578 - -
Vvi9g0022 578 Pfam Pectinesterase 271 563 IPR000070 GO:0030599|GO:0042545
Vvi9g0022 578 SMART PMEI_2 68 223 IPR006501 GO:0004857
Vvi9g0022 578 FunFam Pectinesterase 69 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0022 Vvi-Chr9 245920 248183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0022 1 572 Carbohydrate Esterase AT1G53840 61.301 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0022 - - vvi:100232847 1098.19