Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0021 ATGAAGCATCGTTGTCCTGACTCCTCCGTATTATTTATACCACCCTTCTCCCCCTCCATTGTCTACACCATTCGCCACAAAATCCCACAGATGCCCAGTGTAAAGCAATTCTTCACGGGAATGTCAGATTCCGGCAAGCACACTTCCATCTCCAAGAGAAACAAAAAGCTCTTCTTGCTTGTCTTTTCTTCTGTGCTGCTCATTGCAGCTGTAGTTGGCATTGTCGCCGGCGTCCACTCTCGGAAGAGCTCCACCAACGATGTGGGATTGACTGCTGGACATGCGGTTCTCAAGTCTGCATGCAGCAGCACTCGGTACCCGGATTTATGCTACTCCGCCATTGCAACCGTTCCCGGAGCCAGCAAGAAGGTGACCAGCCAGAAGGACGTGATCGCGGTGTCTCTTAACATCACCGTTACCGCCGTTGAGCACAACTACTTCACCATTGAGAAGCTCCTGGATTTCAAGAATCTCACCAAGCGTGAGAAGGCCGCTCTCCATGATTGCCTGGAGACCATCGACGAGACGCTGGATGAGCTGCACGTGGCCATGGACGACCTGGACGAATACCCCGACAAGAAATCGCTAACCCAGCATGCGGATGACCTCAAGACCCTGATGAGCGCGGCAATGACCAACCAAGAGACGTGCCTCGACGGGTTTTCGCATGACGACGCTGATAAGCACGTCCGCGAGGTGCTGCTCAAGGGTCAGAGGCACGTGGAGCATATGTGCAGTAACGCACTGGCCATGATCAAGAACATGACCGACACTGACATCGCCAGAGAACGTGAAGCCATGAACCGGAAGCTCATGGAGGAGAGGGACGAGAGCGGGTGGCCCAAGTGGCTGTCCGCAGGGGACAGGAGGCTGTTGCAGTCGTCTTCAGTGACGCCTGATGTAGTGGTGGCGGCGGACGGGAGTGGGGATTACAAGACGGTGTCGGCAGCGGTGGCGGCCGCCCCTGAGAAGAGCAGTAAGAGATACATTATCGGAATCAAGGCGGGGGTTTACAAGGAAAACGTAGAAGTGGGCAAGAAGAAGACCAATATTATGTTCTTGGGAGATGGCCGAAGCAACACTATCATCACTGGAAGCAAAAATGTTGTAGATGGCAGCACAACCTTCAACTCTGCAACTGTTGCTGTGGTTGGCGAAAAATTTATAGCCCGGGACATAACCTTCCAAAACACAGCAGGGCCCTCAAAGCATCAAGCCGTTGCTCTTCGAGTTGGGTCAGACTTATCAGCATTCTACAAATGCGATATGCTGGCATACCAAGACACCCTTTATGTTCACTCCAATCGCCAATTTTACATAAATTGCCTTGTAGCAGGCACTGTTGATTTCATCTTTGGCAATGCTGCAGCTGTGTTTCAAGACTGTGATATCCATGCTCGCCGCCCCAATTCAGGCCAAAAGAACATGCTTACTGCTCAAGGCAGGACTGACCCTAACCAGAACACTGGAATTGTGATTCAGAAGTGCAGGATTGGTGCCACTTCTGACCTCCAAGCTGTTATTAGCAGCTTCAAAACATACCTTGGGAGACCATGGAAGGAATACTCGAGGACTGTTGTTATGCAAACATCAATAACCAATGTGATCGACCCTGCTGGATGGCATGAATGGAGTGGGAGTTTTGCACTGAGCACATTGTATTATGGAGAGTACCAAAACACCGGGGCTGGGGCTGGAACCTCAAAGAGAGTAACATGGAAGGGCTTCAAGGTGATTACTAGTGCTAGTGAGGCTCAAGGTTTCACTCCTGGGACGTTCATTGCAGGCAGTAGTTGGTTGGGCTCCACCGGCTTTCCCTATTCTCTTGGTCTGTAA 1836 0.5136 MKHRCPDSSVLFIPPFSPSIVYTIRHKIPQMPSVKQFFTGMSDSGKHTSISKRNKKLFLLVFSSVLLIAAVVGIVAGVHSRKSSTNDVGLTAGHAVLKSACSSTRYPDLCYSAIATVPGASKKVTSQKDVIAVSLNITVTAVEHNYFTIEKLLDFKNLTKREKAALHDCLETIDETLDELHVAMDDLDEYPDKKSLTQHADDLKTLMSAAMTNQETCLDGFSHDDADKHVREVLLKGQRHVEHMCSNALAMIKNMTDTDIAREREAMNRKLMEERDESGWPKWLSAGDRRLLQSSSVTPDVVVAADGSGDYKTVSAAVAAAPEKSSKRYIIGIKAGVYKENVEVGKKKTNIMFLGDGRSNTIITGSKNVVDGSTTFNSATVAVVGEKFIARDITFQNTAGPSKHQAVALRVGSDLSAFYKCDMLAYQDTLYVHSNRQFYINCLVAGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMLTAQGRTDPNQNTGIVIQKCRIGATSDLQAVISSFKTYLGRPWKEYSRTVVMQTSITNVIDPAGWHEWSGSFALSTLYYGEYQNTGAGAGTSKRVTWKGFKVITSASEAQGFTPGTFIAGSSWLGSTGFPYSLGL* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0021 611 CDD PMEI-like_3 99 256 - -
Vvi9g0021 611 SMART PMEI_2 92 251 IPR006501 GO:0004857
Vvi9g0021 611 FunFam Pectinesterase 93 256 - -
Vvi9g0021 611 Gene3D - 294 611 IPR012334 -
Vvi9g0021 611 Pfam Plant invertase/pectin methylesterase inhibitor 97 251 IPR006501 GO:0004857
Vvi9g0021 611 PANTHER PECTINESTERASE 66 601 - -
Vvi9g0021 611 NCBIfam pectinesterase inhibitor domain 70 255 IPR006501 GO:0004857
Vvi9g0021 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 94 256 IPR035513 -
Vvi9g0021 611 SUPERFAMILY Pectin lyase-like 297 610 IPR011050 -
Vvi9g0021 611 ProSitePatterns Pectinesterase signature 2. 444 453 IPR033131 -
Vvi9g0021 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 256 IPR035513 -
Vvi9g0021 611 FunFam Pectinesterase 294 611 - -
Vvi9g0021 611 Pfam Pectinesterase 300 596 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0021 Vvi-Chr9 240661 243795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0021 32 611 Carbohydrate Esterase AT3G14310 69.435 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0021 K01051 - vvi:100251413 1199.5