Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0015 ATGGGGGACTCCTTTGATTCGAGCTCGTTGGACGACTCCGCAGCCGTGGAACTGAGCGGCAAGATTATGGTGGTAGCCATAATAGTTCTCTTCTTCGTGGTTGTGTTTGTTCTCTTTCTGCATCTCTACGCGAAATGGTTCTGGTGGAGAACGGCAGACAGAGGCAGCTCCTTTGGTGGTAGCCGCCGCCGCCGCCGCCGCTTCGTCTTCGCCCCGGGCCAAGACCCGGCTCTGCCCGCCATGCGCAGAGGCCTCGATCCCTCCATTCTTGGTTCCATACCCGTACTGGTCTTCCGTCCTGAAGAGTTCAAGGACGGTCTGGAATGTGCTGTTTGCTTGTCTGAGCTCGTCACCGGCGAGAAAGCCCGGTTGCTTCCCAAATGCAACCATGGGTTCCATGTTGAATGCATCGACATGTGGTTTCAATCCCACTCCACCTGCCCTCTTTGTAGAAACCTAGTTGCGACCGTACTCTCCGACCCAACCACTCCTCAGTCGCCGGAGAGTATTCAGTTATCGGATGAGAGTTCAGCTGCTGGGGACTACTCCTTAGAGTCTCCGAATTACCCCACAAACATCTTGTTTTGGGGAAACCAGACTCGGGTCACCTCTGCTGGATTGTGCTTGGAAGAAGGCGCTGCTTCTTCTCAACCCCCTTGTGCCTCCCCTGGTAATGGGCCAGATGGGATGTTGGTGATTGACATACCCAGGCAGACGGCTGAGAATTTTTCATCCTTGTCGCCTTCCACAGGAGGAACTTCTGAGGAAGAACTCAAATCGCCAATGACGACCAGACTGAGGTCATTGAAGAGGCTTTTGAGCAGAGAGAAAAGGGTCGTTCCTTGCAGTCCCGGTTCTGTTGATGTTGAACAAGGAGGGAGAGGACAAAGTTCAAAATCAACTCTAGATGTCTGA 915 0.5344 MGDSFDSSSLDDSAAVELSGKIMVVAIIVLFFVVVFVLFLHLYAKWFWWRTADRGSSFGGSRRRRRRFVFAPGQDPALPAMRRGLDPSILGSIPVLVFRPEEFKDGLECAVCLSELVTGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNLVATVLSDPTTPQSPESIQLSDESSAAGDYSLESPNYPTNILFWGNQTRVTSAGLCLEEGAASSQPPCASPGNGPDGMLVIDIPRQTAENFSSLSPSTGGTSEEELKSPMTTRLRSLKRLLSREKRVVPCSPGSVDVEQGGRGQSSKSTLDV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0015 304 CDD RING-H2_EL5-like 108 151 - -
Vvi9g0015 304 MobiDBLite consensus disorder prediction 290 304 - -
Vvi9g0015 304 SUPERFAMILY RING/U-box 89 158 - -
Vvi9g0015 304 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 155 IPR044675 -
Vvi9g0015 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 156 IPR013083 -
Vvi9g0015 304 MobiDBLite consensus disorder prediction 242 264 - -
Vvi9g0015 304 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vvi9g0015 304 SMART ring_2 109 150 IPR001841 -
Vvi9g0015 304 MobiDBLite consensus disorder prediction 242 259 - -
Vvi9g0015 304 MobiDBLite consensus disorder prediction 277 304 - -
Vvi9g0015 304 MobiDBLite consensus disorder prediction 161 181 - -
Vvi9g0015 304 Pfam Ring finger domain 108 151 IPR001841 -
Vvi9g0015 304 FunFam RING-H2 finger protein ATL3 76 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0015 Vvi-Chr9 197540 198454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0015 17 277 C3H Transcription Factor Family AT1G53820 46.102 3.79e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0015 - - vvi:100267019 546.969