Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0010 ATGTGGGACAAATGGAGAATGTTGGTTCTAATTTGCGTCTTGAGGTGGGGACCAAGTTTCATCAATGGTGCCACAGATCCACAAGATGCTTCTGCTCTTAGGGTCATGTTCAGCAGTCTTAATTCACCATCTCAGCTTGCCAAATGGAGCTCAAATGGTGGTGATCCATGTGGGGAGTCATGGCAAGGCATTACATGCAAAGGCTCAAGAGTCACAGAAATAGAATTATCAGGTCTTCGACTTACTGGGTCAATGGGCTACCAGCTCACAAGTTTGACATCAGTAGTCAACCTAGACATAAGCAACAACAATCTTGGAAACCAGATACCTTATCAACTCCCTCCAAACCTGCAACGATTAAATCTTGCTGGTAATGGCTTCAATGGGGGCATTCCTTATTCTATTTCTCTGATGATTTCTCTTAAATACCTAAACATCAGTCACAATCAACTTCAGGGTCAACTGGGTGACATGTTCAGTCAGCTGTCGTCCCTCACCACATTGGATTTCTCTTTGAATTCCCTGACGGGTGACCTCCCAGAAAGTTTTAGCTCCCTCTCAAGCATAACGACAATGTTTTTGCAAAACAACCAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAACATTAATCTGCAGAAGGATGGTAACTCATGGAGCTCAGGGCCTGCACCCCCACCTCCACCAGGTACCCCTCCAGTCAGCAGAACCCCCCCAAAACACAAATCTGGTGGTAATGATGGCCCATCTGGTGGTGGTGGTGGCAGTGGTGGCAAATCGGGAATAGGCGGTGGTGGAATAGCAGGAATAGTGATATCCATCCTTGTTATTGGGGCGATAATAACATTCTTTTTAGTGAAGAGAAGATCTAGAAGGCCATCTATGGATGTAGAAAAGCATGATGATCAGCCTTTTGCTCCTCTTGCTTCAAAAGAAGTACAAGAAATGAAGTCTATCCAGGCATCATCCACAATAAACACAAAGACCTATGAACCTTCAGCCTCAATTAATCTTAGACCTCCACCCATTGATCGTCACAAATCATTTGATGAAGAGGATCTTCCGAAGAAGCCCATTATTACCAAGAAGGCTAATACTGCTCCTATAAATGCAATATCATATTCAATTGCAGACCTACAGATGGCTACAGGTAGCTTTAGTGTCGAAAACCTTATTGGTGAGGGGTCTTTTGGACGTGTTTATCAGGCTCAATTTGATGATGGAAAGGTTGTTGCTGTCAAGAAAATAGATTCATCTGCTCTCCCCGATCAATTTTCTGAAGATTTCACAGAGATAGTATCTAATATCTCCCAGTTGCATCACCCAAATGTAACAGAGCTGGTGGGTTATTGTTCAGAGCACGGACAGCACCTCCTAGTTTACGAGTTCCATAAAAATGGCTCGCTGCATGATTTCCTGCATCTTTCAGATGAATACAGCAAGCCTTTGACATGGAACACCCGCGTCAAGATTGCTTTAGGGACTGCCCGTGCATTAGAGTACCTACATGAAGTTTGCTCACCATCAATTGTTCATAAAAATTTCAAATCAGCTAACATATTACTAGACACAGAGCTCAATCCACACCTTACAGACTGTGGGCTAGCAAGCTTCATCCCAAATGCTGATCAGGTACTGAACCATAATGCAGGGTCTGGATACAGTGCACCTGAGGTTGCCATGTCAGGTCAATATACTCTGAAGAGTGATGTTTACAGTTTTGGTGTAGTCATGCTGGAGCTTCTTTCTGGACGTAAACCATTTGATAGCTCCAGGTCCAGATCTGAGCAATCTTTGGTTCGATGGGCTACTCCTCAGCTTCATGACATCGATGCTCTGGCTAAAATGGTTGATCCGGCACTCAAAGGGCTCTACCCAGTCAAGTCTCTCTCCAGGTTCGCTGATGTGATTGCTCTGTGTGTCCAGCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGCGGCTAGTCCAGCGGGCAAACATGAGCAAGAGAACCATTAGTAACGAACAAGGTGCATCTCCGAGAGGTGACAACCCAGACACACAAGACCACACATCTTGA 2145 0.4466 MWDKWRMLVLICVLRWGPSFINGATDPQDASALRVMFSSLNSPSQLAKWSSNGGDPCGESWQGITCKGSRVTEIELSGLRLTGSMGYQLTSLTSVVNLDISNNNLGNQIPYQLPPNLQRLNLAGNGFNGGIPYSISLMISLKYLNISHNQLQGQLGDMFSQLSSLTTLDFSLNSLTGDLPESFSSLSSITTMFLQNNQFTGSINVLASLPLETLNVANNHFTGWIPESLKNINLQKDGNSWSSGPAPPPPPGTPPVSRTPPKHKSGGNDGPSGGGGGSGGKSGIGGGGIAGIVISILVIGAIITFFLVKRRSRRPSMDVEKHDDQPFAPLASKEVQEMKSIQASSTINTKTYEPSASINLRPPPIDRHKSFDEEDLPKKPIITKKANTAPINAISYSIADLQMATGSFSVENLIGEGSFGRVYQAQFDDGKVVAVKKIDSSALPDQFSEDFTEIVSNISQLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLSDEYSKPLTWNTRVKIALGTARALEYLHEVCSPSIVHKNFKSANILLDTELNPHLTDCGLASFIPNADQVLNHNAGSGYSAPEVAMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTISNEQGASPRGDNPDTQDHTS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0010 714 MobiDBLite consensus disorder prediction 243 258 - -
Vvi9g0010 714 CDD STKc_IRAK 414 683 - -
Vvi9g0010 714 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vvi9g0010 714 MobiDBLite consensus disorder prediction 235 280 - -
Vvi9g0010 714 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 372 485 - -
Vvi9g0010 714 MobiDBLite consensus disorder prediction 691 714 - -
Vvi9g0010 714 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Vvi9g0010 714 MobiDBLite consensus disorder prediction 691 708 - -
Vvi9g0010 714 ProSiteProfiles Protein kinase domain profile. 408 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0010 714 Gene3D Transferase(Phosphotransferase) domain 1 487 703 - -
Vvi9g0010 714 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Vvi9g0010 714 Gene3D Ribonuclease Inhibitor 26 247 IPR032675 -
Vvi9g0010 714 SUPERFAMILY L domain-like 25 231 - -
Vvi9g0010 714 Gene3D Phosphorylase Kinase; domain 1 374 485 - -
Vvi9g0010 714 PANTHER LEUCINE RICH REPEAT KINASE 2 69 687 - -
Vvi9g0010 714 Pfam Protein tyrosine and serine/threonine kinase 410 680 IPR001245 GO:0004672|GO:0006468
Vvi9g0010 714 SUPERFAMILY Protein kinase-like (PK-like) 391 680 IPR011009 -
Vvi9g0010 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 486 694 - -
Vvi9g0010 714 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0010 Vvi-Chr9 146961 157000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0010 1 694 Strubbelig Receptor Gene Family AT1G53730 67.801 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vvi9g0010 PK_Tyr_Ser-Thr 4.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0010 - - vvi:100249831 1345.49