Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0008 ATGGCGGAGGATCTGGACAAACCATTGCTTGATCCTGAGAATTTCAACCGAGAAGGCATTGATCTGGAACGGATACCGTTGGAAGAAGTTTTTGAACAACTGAGAACATCACGCGGAGGACTTTCATCTGAAGATGCTGAGGCCCGCTTGATAATTTTTGGCCCAAACAAGCTTGAAGAAAAGCCTGAGAACAAATTTTTGAAATTTCTTAGTTTTATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTGTGATGGCGATCGTACTTGCTAACGGTGGAGGGGAAGGTCCTGACTGGCAGGACTTTGTGGGGATCCTCTGTCTATTGATTATCAATTCAACAATTAGTTTTATAGAGGAAAATAATGCTGGGAATGCAGCAGCAGCACTTATGGCCCGTTTAGCTCCAAAAACAAAGGTTCTCAGAGATGGGCACTGGCAAGAGCAAGATGCAGCTATTCTTGTTCCAGGAGATATTATTAGCATAAAGCTCGGTGATATCATCCCTGCAGATGCTCGCCTACTTGAAGGAGACCCACTAAAGATTGACCAGTCAGCTCTTACTGGAGAATCCCTACCCGTCACCAAAAGAACAGGTGATGAAGTTTTTTCTGGTTCAACGTGTAAACATGGAGAGATTGAAGCTGTGGTGATAGCAACTGGAGTTCATTCTTTCTTTGGAAAAGCAGCACATTTAGTTGACTCCACTGAAGTTATTGGACATTTCCAGAAGGTTCTTACCTCTATCGGAAACTTCTGCATTTGCTCTATAGCTGTGGGAATGATTCTTGAAATCATTGTCATGTTCCCTATACAGCACCGATCATACCGGAATGGTATCAACAACCTTCTTGTGCTCTTAATTGGAGGAATACCCATAGCTATGCCTACGGTGTTATCTGTTACACTTGCTATTGGTTCACATCGACTATCTCAACAGGGTGCCATTACAAAAAGAATGACTGCAATTGAAGAAATGGCTGGAATGGATGTCCTCTGCAGTGATAAAACTGGAACTCTTACTCTGAATCGCCTCACTGTTGATCGAAACCTTATTGAGGTTTTTGCCAAAGATATGGACAAAGACACAGTTGTCTTGCTTGCAGCCAGAGCATCAAGACTGGAAAATCAGGATGCCATTGATACAGCCATCATTAACATGCTTGCTGATCCAAAGGAGGCACGTGCAAACATCACAGAAGTGCATTTTCTGCCTTTCAATCCTGTGGACAAGCGTACTGCAATTACTTACATTGATTCTAATGGTAACTGGATTCGGGCCAGCAAAGGAGCTCCTGAACAGTACCCACATATTCTAAATCTCTGCCAAGAGAAAGAAGAAATTGCTGGAAAAGTCCATGCCATTATTGACAAGTTTGCTGAAAGGGGTTTGCGATCTCTTGGGGTTGCATATCAGGAGGTTCCAGAACAAACTAAGGAAAGTCCTGGAGGTCCTTGGACATTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCAAGACATGACAGTGCTGAGACCATCCGCAGGGCGCTTAACCTTGGGGTTTGTGTTAAGATGATTACAGGTGATCAGTTGGCAATCGCAAAGGAGACAGGTCGTAGACTAGGAATGGGAACAAACATGTACCCCTCTTCATCATTGTTGGGACGTGAGAAAGATGAAAGTGAAGTTCTTCCAGTGGATGAGCTTATTGAAAAGGCTGATGGGTTCGCTGGTGTATTCCCTGAACATAAGTACGAAATTGTGAGAATTCTACAAGAAAAGAAGCATGTGTGTGGAATGACTGGAGATGGCGTGAATGATGCGCCTGCGCTGAAGAAAGCAGATATTGGAATAGCTGTGGCGGATGCTACAGATGCTGCAAGGAGTGCTGCTGATATTGTCTTAACAGAACCTGGTTTAAGTGTGATTATCAGTGCTGTCTTAACTAGCCGAGCTATATTCCAGAGAATGAAGAATTATACAATATATGCCGTCTCTATAACCATAAGGATTGTGCTTGGTTTCGTGCTCCTAGCATTGATCTGGGAATATGACTTCCCACCATTCATGGTTCTGATTATTGCTATACTAAATGATGGGACCATCATGACCATTTCCAAAGATCGGGTCAAGCCATCTCCAAAACCAGACAGTTGGAAGCTCAATGAAATATTTGCAACTGGCGTTGTCATTGGCACTTATCTTGCTTTAGTTACTGTCTTATTTTACTGGGTTATAGACAGTACCACTTTCTTTCAGACCCACTTCCATGTGAGTACCCTAAAGAGTACTGAGGAGATCTCATCTGCTATATATCTGCAAGTCAGCATTATCAGCCAGGCTCTCATATTTGTTACACGCAGTCAAAGTTGGTCATTTATGGAAAGGCCTGGGGCTCTTTTGATGTGTGCATTTGTGGTGGCTCAACTGGTGGCTACATTGATTGCAGTCTATGCAGAGATTAGTTTTGCTTCAATTAGTGGCATTGGCTGGGGATGGGCAGGTGTCATATGGATATATAGCGTGATCTTCTATGTACCCCTTGACATTATCAAGTTTACAGTTCGCTATGCTTTGAGTGGTGAAGCCTGGAATCTCTTGTTCGATAGGAAGACAGCTTTTACTTCTAAGAAGGATTATGGGAAGGAAGATAGAGAGGCTAAGTGGGTACTTTCTCAAAGAACCATACAAGGATTGATGTCTTCAGAGCTTGAGATCAACGGCAGGCGGTCTTCTCTGATTGCTGAACAGGCCAGGAGGCGTGCAGAAATAGCCAGGCTGGGAGAGATACACACATTGAGGGGACATGTAGAATCAGTGGTGAGGCTTAAGAATTTGGACATCAATGTGATCCAGGCAGCTCATACGGTATGA 2859 0.4365 MAEDLDKPLLDPENFNREGIDLERIPLEEVFEQLRTSRGGLSSEDAEARLIIFGPNKLEEKPENKFLKFLSFMWNPLSWVMEAAAVMAIVLANGGGEGPDWQDFVGILCLLIINSTISFIEENNAGNAAAALMARLAPKTKVLRDGHWQEQDAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAHLVDSTEVIGHFQKVLTSIGNFCICSIAVGMILEIIVMFPIQHRSYRNGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFAKDMDKDTVVLLAARASRLENQDAIDTAIINMLADPKEARANITEVHFLPFNPVDKRTAITYIDSNGNWIRASKGAPEQYPHILNLCQEKEEIAGKVHAIIDKFAERGLRSLGVAYQEVPEQTKESPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKDESEVLPVDELIEKADGFAGVFPEHKYEIVRILQEKKHVCGMTGDGVNDAPALKKADIGIAVADATDAARSAADIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFVLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPKPDSWKLNEIFATGVVIGTYLALVTVLFYWVIDSTTFFQTHFHVSTLKSTEEISSAIYLQVSIISQALIFVTRSQSWSFMERPGALLMCAFVVAQLVATLIAVYAEISFASISGIGWGWAGVIWIYSVIFYVPLDIIKFTVRYALSGEAWNLLFDRKTAFTSKKDYGKEDREAKWVLSQRTIQGLMSSELEINGRRSSLIAEQARRRAEIARLGEIHTLRGHVESVVRLKNLDINVIQAAHTV* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0008 952 FunFam Plasma membrane ATPase 347 497 - -
Vvi9g0008 952 CDD P-type_ATPase_H 40 848 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi9g0008 952 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Vvi9g0008 952 Pfam Cation transporter/ATPase, N-terminus 25 87 IPR004014 -
Vvi9g0008 952 PANTHER CALCIUM-TRANSPORTING ATPASE 24 890 - -
Vvi9g0008 952 Gene3D - 332 633 IPR023214 -
Vvi9g0008 952 Gene3D - 138 222 - -
Vvi9g0008 952 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 PRINTS H+-transporting ATPase (proton pump) signature 627 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 PRINTS H+-transporting ATPase (proton pump) signature 767 788 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 PRINTS H+-transporting ATPase (proton pump) signature 596 612 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 PRINTS H+-transporting ATPase (proton pump) signature 454 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 FunFam Plasma membrane ATPase 138 222 - -
Vvi9g0008 952 Pfam haloacid dehalogenase-like hydrolase 331 610 - -
Vvi9g0008 952 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Vvi9g0008 952 Gene3D - 904 952 - -
Vvi9g0008 952 SFLD Haloacid Dehalogenase 317 647 - -
Vvi9g0008 952 Gene3D - 100 822 - -
Vvi9g0008 952 FunFam ATPase 4 plasma membrane-type 588 822 - -
Vvi9g0008 952 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 854 IPR023298 -
Vvi9g0008 952 Pfam E1-E2 ATPase 136 314 - -
Vvi9g0008 952 Gene3D - 347 497 IPR023299 GO:0000166
Vvi9g0008 952 NCBIfam plasma-membrane proton-efflux P-type ATPase 40 813 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vvi9g0008 952 FunFam Plasma membrane ATPase 490 644 - -
Vvi9g0008 952 SMART Cation_ATPase_N_a_2 21 93 IPR004014 -
Vvi9g0008 952 SFLD p-type atpase 317 647 IPR044492 -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 514 524 - -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 492 503 - -
Vvi9g0008 952 PRINTS P-type cation-transporting ATPase superfamily signature 619 631 - -
Vvi9g0008 952 SUPERFAMILY HAD-like 331 643 IPR036412 -
Vvi9g0008 952 NCBIfam HAD-IC family P-type ATPase 571 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi9g0008 952 NCBIfam HAD-IC family P-type ATPase 107 364 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0008 Vvi-Chr9 123050 138829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0008 1 952 Primary Pumps ATPases AT1G17260 80.273 0.0 1535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0008 K01535 - vvi:100265284 1801.95