Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0006 ATGTGGCTCTTGCGGTCCCAGATTCATTCACCCCTATACCGCAGCAGCTGCCACAGCCACAGCCTCTGCGACAGCGGCAGCTACAGCAGCCGTCTCTTGGTCTTGCTCCTGCTACTGCTCTCTTGTTTTGTCTCTTCTCACCAGGCCTGCCACCACCTGGATCGGGCCTCTCTGTTATCCTTCTCCCGGGACATTTCTTCCCCTCCGTCCGCTCCTCTCAACTGGTCTTCCTTTGACTGCTGCCTCTGGGAAGGGATTACTTGTTACGAGGGCCGGGTCACCCATCTACGCCTGCCTTTAAGGGGCCTCAGCGGGGGCGTCTCTCCCTCTCTTGCTAATCTCACCCTTCTCTCCCACCTCAATCTCTCCCGTAATTCGTTCTCTGGTTCTGTTCCCCTAGAATTATTTTCGTCCTTGGAGATTCTTGATGTGAGCTTCAACCGTCTCTCAGGAGAATTACCACTGTCTCTGTCTCAGTCGCCTAACAACTCCGGAGTCTCGCTCCAGACAATAGATTTATCAAGTAATCACTTTTATGGGGTAATCCAATCTTCGTTTCTCCAGCTGGCTAGGAATTTGACCAATTTCAATGTCAGCAACAACAGCTTCACAGACTCTATTCCATCTGACATCTGCAGAAATTCTCCCCTCGTTAGGCTCATGGATTTCTCCTACAACAAATTCAGCGGCCGGGTTCCCCTGGGGCTTGGGGACTGTTCCAAACTGGAGGTTCTCCGAGCAGGCTTTAACTCTCTCTCAGGATTGATCCCCGAAGATATTTACAGCGCAGCAGCTTTGCGGGAAATTTCATTGCCAGTCAACAGCCTCTCAGGGCCCATCTCCGATGCCATCGTCAACCTCAGCAACCTAACTGTCCTTGAGCTCTACTCTAACCAGTTGATTGGCAATCTTCCTAAGGATATGGGGAAGCTCTTCTACTTGAAGCGGCTGCTCCTTCACATCAACAAACTGACTGGTCCTCTGCCTGCATCTCTGATGAATTGCACCAAGCTAACAACACTGAATTTGAGGGTCAACTTGTTTGAAGGAGATATCTCCGTGATTAAATTTTCCACCCTCCAAGAACTGAGCACACTTGACCTCGGCGATAATAACTTCACTGGCAACCTTCCTGTAAGTCTCTACTCGTGCAAGTCACTGACCGCTGTCCGACTGGCCAACAACCGGCTAGAGGGACAGATCTTGCCTGACATACTTGCTCTGCAATCTCTGTCCTTCCTTTCAATCTCCAAAAACAATCTAACCAACATCACTGGGGCAATCAGGATGCTGATGGGTTGCAGAAATCTCAGCACTGTCATTCTTACACAGAACTTTTTTAATGAGCGATTGCCAGATGATGATAGTATTTTAGATTCAAACGGGTTCCAAAGGCTCCAGGTTCTGGGTCTTGGGGGTTGCCGATTCACTGGTCAGGTGCCTACCTGGCTAGCTAAGCTTAGCAAGCTAGAGGTCCTGGACCTGTCTCTTAATCAAATCACAGGCTCAATCCCTGGTTGGTTGGGGACTCTGCCCAGCCTTTTCTATATAGACCTGTCCAGCAACCTTATTTCAGGGGAATTTCCCAAGGAAATTATACGATTGCCAAGGCTGACGTCGGAAGAGGCGGCCACTGAAGTAGACCAGAGTTACCTAGAGTTGCCTGTATTTGTCATGCCCAACAATGCCACTAATCTGCAGTACAAACAGCTCTCCAACCTTCCACCAGCAATATATCTGAGAAACAACAGCCTCAGTGGCAATATCCCTACTGAGATCGGTCAGTTGAAGTTTATTCATATTCTGGATCTCAGCTATAACAATTTCTCTGGCAGCATTCCAGACCAGATATCTAACCTCACTAACTTGGAAAAATTGGACCTCTCGGGAAACCATCTCTCTGGTGAAATCCCAGGGTCGTTGAGAAGCCTCCATTTCTTATCTTCCTTCAATGTTGCAAACAACAGTCTTGAAGGAGCAATACCATCAGGAGGTCAGTTTGATACTTTTCCTAACTCTAGCTTTGAAGGTAATCCAGGGTTGTGCGGTCCACCTCTGCAGCGGTCATGTTCCAATCAACCAGGAACCACCCATTCCTCTACACTTGGTAAAAGTCTAAACAAGAAACTCATTGTTGGACTCATAGTAGGGATTTGTTTTGTCACTGGGTTAATTCTTGCCTTGCTGACATTATGGATATGCAAGAGGAGAATCCTTCCAAGAGGGGAATCTGAGAAGAGTAATCTGGACACAATTTCCTGCACCTCCAATACAGATTTTCATTCTGAGGTTGACAAGGATACCAGCATGGTCATAGTGTTCCCAAGCAATACTAATGGAATTAAGGATCTCACAATATCTGAGATCTTTAAGGCCACGGACAATTTCAATCAAGAAAACATCATTGGATGCGGGGGCTTTGGTTTGGTTTATAAAGCTATTTTAGAAAATGGGACCAAGCTTGCAATTAAGAAACTTTCAGGAGATCTGGGCTTGATAGAAAGGGAATTCAAAGCAGAGGTTGAAGCTCTGTCCACAGCCCAACACAAGAACCTAGTGTCCCTCCAAGGTTACTGTGTGCATGACGGCATTCGGCTACTGATATATTCCTACATGGAGAATGGAAGTCTGGATTACTGGTTACATGAGAAGACTGATGGTTCACCTCAACTTGATTGGCGGTCTCGACTGAAAATAGCACAGGGAGCAAGCTGTGGGCTGGCTTACATGCACCAAATCTGCGAGCCACACATTGTGCATCGTGACATCAAGTCGAGCAACATCCTTCTCAATGACAAGTTTGAAGCACATGTAGCAGATTTTGGATTGTCCAGATTGATTCTCCCTTATCACACTCATGTTACAACAGAGCTAGTAGGTACTCTGGGTTACATACCTCCAGAGTACGGGCAAGCATGGGTGGCTACTTTGAGAGGAGATGTGTACAGTTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAAGAGGCCTGTGGAGGTATTCAAGCCAAAAATGTCAAGAGAGTTGGTTGGGTGGGTGCAGCAAATGAGGTCTGAGGGAAAACAAGACCAAGTCTTTGATCCTCTTCTCAGAGGCAAGGGCTTTGAAGAAGAGATGCTGCAGGTGCTTGATGTGGCCTGCATGTGCGTCAGCCAGAATCCTTTCAAGAGACCCACAATCAAGGAAGTTGTTAATTGGCTCGAAAATGTAGGGAACAACCCACAGGCACCCAAGTAA 3237 0.4739 MWLLRSQIHSPLYRSSCHSHSLCDSGSYSSRLLVLLLLLLSCFVSSHQACHHLDRASLLSFSRDISSPPSAPLNWSSFDCCLWEGITCYEGRVTHLRLPLRGLSGGVSPSLANLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPLSLSQSPNNSGVSLQTIDLSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPLVRLMDFSYNKFSGRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIVNLSNLTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLRVNLFEGDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDILALQSLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDSILDSNGFQRLQVLGLGGCRFTGQVPTWLAKLSKLEVLDLSLNQITGSIPGWLGTLPSLFYIDLSSNLISGEFPKEIIRLPRLTSEEAATEVDQSYLELPVFVMPNNATNLQYKQLSNLPPAIYLRNNSLSGNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSLHFLSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSNQPGTTHSSTLGKSLNKKLIVGLIVGICFVTGLILALLTLWICKRRILPRGESEKSNLDTISCTSNTDFHSEVDKDTSMVIVFPSNTNGIKDLTISEIFKATDNFNQENIIGCGGFGLVYKAILENGTKLAIKKLSGDLGLIEREFKAEVEALSTAQHKNLVSLQGYCVHDGIRLLIYSYMENGSLDYWLHEKTDGSPQLDWRSRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLNDKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPVEVFKPKMSRELVGWVQQMRSEGKQDQVFDPLLRGKGFEEEMLQVLDVACMCVSQNPFKRPTIKEVVNWLENVGNNPQAPK* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0006 1078 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Vvi9g0006 1078 ProSiteProfiles Leucine-rich repeat profile. 489 512 IPR001611 GO:0005515
Vvi9g0006 1078 FunFam Tyrosine-sulfated glycopeptide receptor 1 357 695 - -
Vvi9g0006 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Vvi9g0006 1078 PRINTS Leucine-rich repeat signature 490 503 - -
Vvi9g0006 1078 PRINTS Leucine-rich repeat signature 620 633 - -
Vvi9g0006 1078 ProSiteProfiles Protein kinase domain profile. 796 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0006 1078 Pfam Leucine Rich Repeat 622 644 IPR001611 GO:0005515
Vvi9g0006 1078 Gene3D Phosphorylase Kinase; domain 1 756 871 - -
Vvi9g0006 1078 Gene3D Ribonuclease Inhibitor 357 698 IPR032675 -
Vvi9g0006 1078 FunFam Leucine-rich repeat receptor-like kinase 55 164 - -
Vvi9g0006 1078 SUPERFAMILY L domain-like 49 303 - -
Vvi9g0006 1078 SUPERFAMILY Protein kinase-like (PK-like) 778 1068 IPR011009 -
Vvi9g0006 1078 FunFam Putative LRR receptor-like serine/threonine-protein kinase 755 871 - -
Vvi9g0006 1078 Gene3D Ribonuclease Inhibitor 53 163 IPR032675 -
Vvi9g0006 1078 Pfam Protein kinase domain 797 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0006 1078 SMART LRR_typ_2 360 384 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 620 643 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 114 138 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 511 535 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 408 430 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 287 311 IPR003591 -
Vvi9g0006 1078 SMART LRR_typ_2 487 510 IPR003591 -
Vvi9g0006 1078 Gene3D Ribonuclease Inhibitor 164 260 IPR032675 -
Vvi9g0006 1078 Gene3D Ribonuclease Inhibitor 261 356 IPR032675 -
Vvi9g0006 1078 PANTHER LEUCINE RICH REPEAT KINASE 2 284 1069 - -
Vvi9g0006 1078 FunFam Leucine-rich repeat receptor-like protein kinase 872 1078 - -
Vvi9g0006 1078 Pfam Leucine rich repeat N-terminal domain 54 88 IPR013210 -
Vvi9g0006 1078 SUPERFAMILY L domain-like 565 685 - -
Vvi9g0006 1078 SUPERFAMILY L domain-like 216 540 - -
Vvi9g0006 1078 Gene3D Transferase(Phosphotransferase) domain 1 872 1076 - -
Vvi9g0006 1078 ProSiteProfiles Leucine-rich repeat profile. 622 644 IPR001611 GO:0005515
Vvi9g0006 1078 SMART serkin_6 796 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0006 1078 ProSitePatterns Protein kinases ATP-binding region signature. 802 825 IPR017441 GO:0005524
Vvi9g0006 1078 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 257 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0006 Vvi-Chr9 56559 59795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0006 3 726 Miscellaneous Gene Families AT1G17240 50.949 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi9g0006 Pkinase 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0006 - - vvi:100256619 2103.18