Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1688 ATGGCGTCGGAGGGACGATGCCTGTACGAGGTTCTCGGCCTCACAACCGACGCCACCGCAGATGAAATACGGTCGGCGTACAAGAAGCTGGCTCTCCAGCGCCATCCGGATAAGCTGGTTCACTCCGGCCTCAGCAAAGCCGACGCCACCGCTCAGTTCCAAGAGCTCCTTAACGCCTACGAAGTCCTCTCCAATCCCGAGGAACGCGCTTGGTACGATTCCCACCGATCTCAAATCCTCTTCTCTAACCCCACCTCTTCCAACGGCTCCGTCCCCAATCTCTTCTCCTTCTTCTCCAATTCCGTGTATTCTGGGTACGACGATACGCGCAAGGGATTCTATAAGGTTTATTCGGAGGTTTTTGACAAAATCTACGCTACTGAAGTCAATTTCGCGAAAAAATTAGGGTTAGGGTCTATTAAGGAGGCTCCAATGATGGGGAATTTGGAGAGTCCGTATTCGCAGGTGACTGCATTTTATGGATATTGGATAGGGTTTTCTACAGTGATGGATTTTGCGTGGGTTGATGAGTACGATGTTAGGGCGGGGCCGAATCGAAAGTCTAGGAGGTTGATGGAGGAGGAGAACCGGAAGCTGAGGAAGAAGGCCAAGAGGGAGTACAACGAGACGGTTCGGGGGCTGGCGAAGTTCGTGAAGAGGAGGGACAAGAGGGTAATTGATATGCAGGTGAAGAAGAGTTTGGAGGAGGAAAAAAGGAAGGAGGAGGAAAAGACGAGGAAGTGGGAGGAATTTGAGAGGGGGAGGTTGGAGAGGGCGAGGGCGAAAGTGGAGCCGGAGTGGGTCAGGGCTGTGGAGGATGATGGGAATGATGATGATTGGGAATTTGAGGATGCAGGTGGTGGGAGGAAGGAGGAGGAGGAATTTTATTGTGTGCTTTGTAGAAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAATCATGAGAAGTCAAAGAAGCACAAGGAGTGGGTGGCGGAGTTTAGGGAGTCAGTTAAGGAAGAAGATGAAAGGTATGGAGATGCTGAAGCAGGGATTCATGGCAACGGGGATCAAAGTGAGGTGGAGTTGCAGGAGCAGTTTGAGGATGGTTTGGAGTTGGAGGAAGAGGAGATTGAAGATGGGGCTCAAATTGAATCCAGTAACGAGGAAGAGTTTGTTGTTGGCGATGTTAGTCATAGTGGTAATGGTACAAATGCGGAGTTGGGGTCTGATGATGAAATGAGTGTGCTTGAAGCAATGTTGTCGGGCCACAAGAATAGGAAAAATGGGAAAACTGCTGTTGCTTCAGTGCTGGAGCCGGAGTCTTCTGTTACTGAAGCTCCTGTTGACATTAACAATGATGAGATGGACTTTATGGAATATGATAACCGAAAGAGCTCGCGGAGGAGGAGAGGCAAGAAAGACAAGGGTAAGAGATCTAATGGGGAGGCAATGAAGCCTGACAGTAGTACTGGAGACAAGGGTGGTCAGGATGAACAAAATAGTGGCTCTGATGCTTCACATATCCAGGATTCTTCAACTTATTCTGTTGCGGAAAATGAAACTGATGGTAAGGAGGATCATCATGCAGAAACAAATAAGATTCCAAAGCAACCTGTCAATAGAAAAGCTACCTCCAAGGGTGAGATAGATACGAAACCGAAGGAATCAAACAAAGTGAGGAAAGCAAAGGTCCTCATGAGGGCATAG 1686 0.487 MASEGRCLYEVLGLTTDATADEIRSAYKKLALQRHPDKLVHSGLSKADATAQFQELLNAYEVLSNPEERAWYDSHRSQILFSNPTSSNGSVPNLFSFFSNSVYSGYDDTRKGFYKVYSEVFDKIYATEVNFAKKLGLGSIKEAPMMGNLESPYSQVTAFYGYWIGFSTVMDFAWVDEYDVRAGPNRKSRRLMEEENRKLRKKAKREYNETVRGLAKFVKRRDKRVIDMQVKKSLEEEKRKEEEKTRKWEEFERGRLERARAKVEPEWVRAVEDDGNDDDWEFEDAGGGRKEEEEFYCVLCRKKFKSEKQWKNHEKSKKHKEWVAEFRESVKEEDERYGDAEAGIHGNGDQSEVELQEQFEDGLELEEEEIEDGAQIESSNEEEFVVGDVSHSGNGTNAELGSDDEMSVLEAMLSGHKNRKNGKTAVASVLEPESSVTEAPVDINNDEMDFMEYDNRKSSRRRRGKKDKGKRSNGEAMKPDSSTGDKGGQDEQNSGSDASHIQDSSTYSVAENETDGKEDHHAETNKIPKQPVNRKATSKGEIDTKPKESNKVRKAKVLMRA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1688 561 Pfam DnaJ domain 8 73 IPR001623 -
Vvi8g1688 561 MobiDBLite consensus disorder prediction 486 511 - -
Vvi8g1688 561 MobiDBLite consensus disorder prediction 536 555 - -
Vvi8g1688 561 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vvi8g1688 561 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vvi8g1688 561 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vvi8g1688 561 MobiDBLite consensus disorder prediction 372 561 - -
Vvi8g1688 561 MobiDBLite consensus disorder prediction 512 528 - -
Vvi8g1688 561 Gene3D Classic Zinc Finger 283 345 - -
Vvi8g1688 561 SUPERFAMILY beta-beta-alpha zinc fingers 287 340 IPR036236 -
Vvi8g1688 561 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 557 IPR044648 -
Vvi8g1688 561 Coils Coil 231 251 - -
Vvi8g1688 561 MobiDBLite consensus disorder prediction 333 352 - -
Vvi8g1688 561 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vvi8g1688 561 SUPERFAMILY Chaperone J-domain 5 77 IPR036869 -
Vvi8g1688 561 Gene3D DnaJ domain 1 90 IPR036869 -
Vvi8g1688 561 CDD DnaJ 7 65 IPR001623 -
Vvi8g1688 561 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Vvi8g1688 561 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Vvi8g1688 561 SMART dnaj_3 6 68 IPR001623 -
Vvi8g1688 561 Coils Coil 189 209 - -
Vvi8g1688 561 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Vvi8g1688 561 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1688 Vvi-Chr8 22381356 22383930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1688 3 499 C2H2 Transcription Factor Family AT1G74250 52.794 5.23e-150 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1688 DnaJ 3.4e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1688 K09506 - vvi:100245270 1044.65