Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1687 ATGGTGGAGAGGTACTTGGGCCTCCTTGTTTGGGCTGACAAGGGTTGGAAGAGGCCCGTGGTGGTGTATTTGGGCATGCCTCTTTTGTTTTCGGATTCAAGAGGGGTGGGTCCACTAAATTTGGGTCAGTCCCAAGTTTGCACTAAATCAAAGGTTGCACAAAGAAAGGCACTGGGCAACACATGTGAGACATGTGGAGAAGACTTTGAGTCAAGGAATAAACTACATCAGCATTTGGGTGACACGGGTCACGCCATGCTGAGAGCTCGGTGA 273 0.4982 MVERYLGLLVWADKGWKRPVVVYLGMPLLFSDSRGVGPLNLGQSQVCTKSKVAQRKALGNTCETCGEDFESRNKLHQHLGDTGHAMLRAR* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1687 90 ProSitePatterns Zinc finger C2H2 type domain signature. 62 84 IPR013087 -
Vvi8g1687 90 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 47 90 IPR044648 -
Vvi8g1687 90 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 89 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1687 49 90 C2H2 Transcription Factor Family AT1G74250 52.381 2.30e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g1687 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1687 K09506 - vvi:100245270 90.8929