Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1686 ATGGAACCCAAGCCCCACCCCAACAACGGCTTCTCCTTCTCGAATCTCTTCAATCTTGAGTCTTTGATGAACTTTCAACTCCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGTAGCCAAGGTGGAACAATGGGAGACTATCACAATGGAATTATGTCTGAGCGAGAATTGAGCTTGGTGAGTAAGAAGAGACGGTCTCAAAACAGTGAGGACGAGGAAGAGGACGGTAATTACAGCACCTTCATTTCAGAGGAGCGGTATCGGTCAATGCTTGGAGAACACATTCAGAAATATAAGAGGAGGTTTAAAGATCCCTCACCAAGCCCTGCTCCGGCACGGATGGGGGTTTCAGTTCCAAAAAGTACTTTAGGCTCCAAAACGAGGAAGTTGGGGAATGAGCACAGAGGAGGTTTGCATGAAGTTGAAACCCCGTCTGAGTGGCTTGCTGACGTTGGTCCTCAAAAGATGGTTGGCTTTCATGATGCGGATTTTGCACCAGAATATGGCACTTCTAGAACGATCTATGAATCATCTTATTTGGATATTGGGGAGGGCATCGCTTATAGGATCCCACCAGCTTATGAAAAATTGGCTGTTACACTAAACTTGCCAACCTTCTCAGATATACGGGTGGAGGAATATTACTTAAAGAGCACCCTAGATTTAGGTTCCTTAGCAGAAATGATGACCGCTGATAAGAGATTTGGGCCTAAAAGCCGAGCAGGGATGGGTGAGCCTCAGTCCCAGTATGAATCACTTCAGGCGAGATTGAGGGCCTTGTCATCTTCTAATTCAGTCCAGAAGTTCAGTCTGAAAGTATCTGATATTGCACTAAATTCATCCTCCATCCCAGAAGGGGCTGCTGGAAGTATACAGCGGTCTATTTTGTCAGAGGGTGGTGCATTGCAGGTGTACTATGTGAAGGTCTTGGAGAAAGGAGACACTTATGAGATCATTGAACGAAGTTTACCAAAGAAGCAAAAGGTAAAGAAGGACCCATCTATGATCGAGAAAGAGGAAATGGAGAGGATTGGAAAAGTTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCAGAGAATATTTATTAATTTCCATCGAAAGCAACTAATTGATGCCAAAAGGTTCTCAGAAAACTGTCAACGAGAGGTGAAACTGAAGGTGAGCAGATCACTTAAATTGATGAGGGGTGCTGCAATCCGCACGAGGAAACTTGCTAGAGATATGCTTGTATTTTGGAAAAGAGTGGATAAAGAGATGGCAGAATTGAGGAAGAAAGAGGAAAGAGAAGCTGCAGAAGCTTTGAGGCGTGAACAGGAACTTCGAGAAGTGAAGAGACAACAGCAAAGGCTCAATTTTCTGATAACACAAACGGAGCTGTTCAGTCACTTCATGCAGAACAAGGCAACTTCACAGCCCTCTGAAGCTTTACCTGTCGATGGTGAAAAACCGAAGGACCAGGAACTGCTTGTAAGCTCTTCAGATGATGTTCCTGGAGAAGAACAAGATCCTGAGGATGATGAATTGAAGAAGGAAGCTCTGAAAGCTGCTCAAGATGCAGTTTCTAAGCAGAAAAGGTTAACTAGTGCATTTGATAATGAATGTTTGAAGCTGCGCCAAGCTGCTGAACCTGAGGTCCCTTCACCGGATGCATCTGGTGCTGCAGGTTCTAGTAACATAGATCTACTGCACCCCTCCACCATGCCAGTGGCATCATCTGTGCAGACGCCAGAGTTGTTTAAAGGTTCTCTTAAAGAATATCAGCTAAAAGGCCTTCAGTGGCTGGTTAATTGTTATGAGCAGGGTCTAAACGGTATTCTTGCCGATGAGATGGGCCTGGGAAAGACTATCCAGGCAATGGCATTCTTGGCTCATTTGGCAGAGGAAAAGAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTCTTGAACAACTGGGCTGATGAAATTAGCCGCTTCTGCCCTGACTTGAAAACTCTTCCATATTGGGGAGGGCTTCAAGAACGAATGATACTTAGGAAAAACATCAATCCAAAGCGTTTATATAGAAGGGAGGCAGGATTTCACATTCTCATCACCAGTTACCAACTGTTGGTGTCTGATGAGAAGTATTTCCGACGTGTGAAATGGCAGTATATGGTATTGGATGAAGCTCAGGCAATCAAAAGCTCAAACAGTATAAGGTGGAAGACACTGCTCAGTTTTAATTGTCGAAATCGGTTACTCCTGACTGGTACGCCTATCCAGAATAACATGGCTGAATTGTGGGCCCTTCTACATTTCATTATGCCTACCTTATTTGACAGCCATGAACAATTCAATGAATGGTTTTCAAAGGGAATTGAGAATCATGCTGAGCACGGGGGGACGTTAAATGAGCACCAGCTCAACAGATTGCATGCAATTTTGAAGCCCTTCATGCTGCGGCGGGTTAAGAAAGATGTGGTTTCTGAGCTTACAGGCAAAACAGAGGTTACAGTGCATTGCAAGTTGAGTTCTCGGCAACAAGCTTTCTATCAAGCTATAAAGAATAAGATATCTCTTGCTGAGTTGTTTGATGGTAATCGTGGGCACCTTAATGAGAAGAAAATTCTCAATTTAATGAATATTGTTATTCAGTTGAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAATGAGGGAAGCACATACCTTTATTTTGGAGAGATTCCAAATTCTCTTCTTCCCCCACCCTTTGGGGAGTTGGAGGACATGCACTACGCAGGAGCTCAGAATCCTATTACATACAAGGTGCCAAAACTCGTCCACCAAGAAGTAATGCAAAGTTCCGGGATCATTTCCTCAACAGCTCGGCGCGGTGTTCATAGAGAAACATTTCTGAAGCATTTTAATATATTTTCCCCAGTAAATATTTATCAGTCTGTGCTCCCACAAGAGAATAACTCCAATGGTTCAGCTGTTAAAAGTGGAACATTTGGTTTTACCCATCTGATGGATTTGTCCCCAGAAGAGGTTGCATTTCTTGCAACTGGTACCTTCATGGAGAGACTTCTCTTTTTCATTATGAGATGGGACCGGCAATTTTTGGATGGAATCTTGGACTTGCTCATGGAAGCCGAGGAGGAGGATTTTAGTAACAGTCATCTTGATAGTGGTAAAGTAAGAGCTGTTACACGAATGCTACTGATGCCATCGAGATCTGAGACTAATTTACTTAGAAGAAAGCTTGCAACTGGTCTGGGTCATGCTCCTTTTGAGGCTCTAGTTGTCCCTCATCAGGATAGGCTTCAAGCAAACACTAGGCTTGTTCATGCTACATACACTTTCATCCCACGGACCAGAGCTCCCCCAATCAATGCCCATTGCTCGAATAGAAACTTTGCTTATAAATTGCTTGAAGAACTGCATCACCCCTGGCTTAAGAGGTTGTTTATTGGGTTTGCACGCACATCTGACTATAATGGACCCAAAAAGCCAGATGTTCCTCATCATTTGATTCAAGAGATTGACTCTGAATTGCCTGTTTCAAAACCTGCTCTTCAGTTGACTTACAAGATATTTGGTTCATCTCCCCCCATGCAAAGCTTTGACCCAGCAAAATTGCTCACAGACTCTGGGAAGCTTCAAACACTTGACATTTTACTAAAACGCTTGAGGGCTGAAAATCACCGAGTACTCTTGTTCGCTCAAATGACAAAAATGCTAAATATACTGGAGGACTACATGAACTATAGGAAATATAGATATCTCAGACTTGATGGTTCTTCCACAATTATGGACCGGCGTGACATGGTCAGAGATTTCCAGCTTCGGAGTGATATCTTTGTGTTCTTGCTGAGTACCAGAGCTGGTGGACTGGGTATTAATTTGACTGCAGCTGACACTGTCATTTTCTATGAAAGTGATTGGAACCCAACCTTGGATTTACAGGCAATGGATAGGGCTCATCGCTTGGGTCAGACCAAGGATGTTACTGTCTACCGGTTAATTTGTAAAGAGACAGTTGAGGAGAAGATTTTGCAAAGAGCAAGTCAGAAAAGTACAGTGCAGCAGCTTGTGATGACAGGTGGTCATGTTCAGGGTGATCTCTTGGCTCCTGAGGATGTTGTTTCTTTACTTCTTGATGACGCCCAGTTGGAGCAGAAACTAAGAGATCTGCCACTTCAGGATAAACAAAAGAAAAAGCGTGGGACAAAAGGTATATTGCTGGATGCAGAAGGGGATGCAACTTTGGAAGATTTCCCAAACATATCTCAGGGTAATGGACAGGAGCCCTCTCCAGATGCAGAGAGACCAAAATCCAGTAGTAAAAAGAGGAAGGCTGCCACTGACAAGCAAACTCCTCCAAAGCCAAGGAATTCTCAAAAAGCAATGAAAAATGTTGATTCTTATACGGGGATGACTGATCCCAACTCGATGGCAATGGACTATGAGTTGGATGATTCCCTTCAAAATGATGACATGCAGCTACAGAAGCATAAGAGACCGAAAAGACCAACAAAGAGTGTGAATGAAAATCTTGAACCAGCATTTACCAACTCCACAGTGATTATAGAGCAAACACAATACCAACCTCACCTTGAGCTTGGTCCTGGTGGCCTCAGAGCGGGAGGAAAGGATGATACGCCCCTGCATACTGACTCTTTAACGTGA 4674 0.4356 MEPKPHPNNGFSFSNLFNLESLMNFQLPQQDDDFDYYGNSSQDESRGSQGGTMGDYHNGIMSERELSLVSKKRRSQNSEDEEEDGNYSTFISEERYRSMLGEHIQKYKRRFKDPSPSPAPARMGVSVPKSTLGSKTRKLGNEHRGGLHEVETPSEWLADVGPQKMVGFHDADFAPEYGTSRTIYESSYLDIGEGIAYRIPPAYEKLAVTLNLPTFSDIRVEEYYLKSTLDLGSLAEMMTADKRFGPKSRAGMGEPQSQYESLQARLRALSSSNSVQKFSLKVSDIALNSSSIPEGAAGSIQRSILSEGGALQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPSMIEKEEMERIGKVWVNIVRRDIPKHQRIFINFHRKQLIDAKRFSENCQREVKLKVSRSLKLMRGAAIRTRKLARDMLVFWKRVDKEMAELRKKEEREAAEALRREQELREVKRQQQRLNFLITQTELFSHFMQNKATSQPSEALPVDGEKPKDQELLVSSSDDVPGEEQDPEDDELKKEALKAAQDAVSKQKRLTSAFDNECLKLRQAAEPEVPSPDASGAAGSSNIDLLHPSTMPVASSVQTPELFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTGKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDGNRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGELEDMHYAGAQNPITYKVPKLVHQEVMQSSGIISSTARRGVHRETFLKHFNIFSPVNIYQSVLPQENNSNGSAVKSGTFGFTHLMDLSPEEVAFLATGTFMERLLFFIMRWDRQFLDGILDLLMEAEEEDFSNSHLDSGKVRAVTRMLLMPSRSETNLLRRKLATGLGHAPFEALVVPHQDRLQANTRLVHATYTFIPRTRAPPINAHCSNRNFAYKLLEELHHPWLKRLFIGFARTSDYNGPKKPDVPHHLIQEIDSELPVSKPALQLTYKIFGSSPPMQSFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQLRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKSTVQQLVMTGGHVQGDLLAPEDVVSLLLDDAQLEQKLRDLPLQDKQKKKRGTKGILLDAEGDATLEDFPNISQGNGQEPSPDAERPKSSSKKRKAATDKQTPPKPRNSQKAMKNVDSYTGMTDPNSMAMDYELDDSLQNDDMQLQKHKRPKRPTKSVNENLEPAFTNSTVIIEQTQYQPHLELGPGGLRAGGKDDTPLHTDSLT* 1558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1686 1557 Pfam Helicase conserved C-terminal domain 1217 1326 IPR001650 -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 500 526 - -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 1437 1453 - -
Vvi8g1686 1557 Gene3D - 1184 1417 IPR027417 -
Vvi8g1686 1557 CDD SF2_C_SNF 1205 1337 - -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 1397 1516 - -
Vvi8g1686 1557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1217 1377 IPR001650 -
Vvi8g1686 1557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 606 777 IPR014001 -
Vvi8g1686 1557 Pfam DNA-binding domain 351 481 IPR020838 GO:0003677
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 1421 1436 - -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 110 148 - -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 1454 1477 - -
Vvi8g1686 1557 FunFam Putative DNA helicase INO80 566 844 - -
Vvi8g1686 1557 SMART ultradead3 590 785 IPR014001 -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 66 81 - -
Vvi8g1686 1557 SMART helicmild6 1243 1326 IPR001650 -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 30 87 - -
Vvi8g1686 1557 PANTHER HELICASE SRCAP-RELATED 79 544 - -
Vvi8g1686 1557 FunFam DNA helicase INO80-like protein 1185 1433 - -
Vvi8g1686 1557 Gene3D - 570 846 IPR038718 -
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 30 52 - -
Vvi8g1686 1557 Pfam SNF2-related domain 609 896 IPR000330 GO:0005524|GO:0140658
Vvi8g1686 1557 MobiDBLite consensus disorder prediction 1532 1557 - -
Vvi8g1686 1557 Coils Coil 428 467 - -
Vvi8g1686 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 822 IPR027417 -
Vvi8g1686 1557 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Vvi8g1686 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 824 1396 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g1686 Vvi-Chr8 22355785 22372476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g1686 615 896 RAD5 or RAD16-like Gene Family AT5G43530 29.052 1.73e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi8g1686 SNF2_N 1.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1686 K11665 - vvi:100250397 3029.97